Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007787A_C01 KMC007787A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_282620.1| hypothetical protein Cj1482c [Campylobacter jej... 32 4.2
gb|EAA05538.1| agCP10604 [Anopheles gambiae str. PEST] 32 5.5
ref|ZP_00129368.1| hypothetical protein [Desulfovibrio desulfuri... 32 5.5
ref|NP_181534.1| CHP-rich zinc finger protein, putative; protein... 31 9.5
gb|AAO37142.1| hypothetical protein [Arabidopsis thaliana] 31 9.5
>ref|NP_282620.1| hypothetical protein Cj1482c [Campylobacter jejuni]
gi|11346750|pir||G81294 hypothetical protein Cj1482c
[imported] - Campylobacter jejuni (strain NCTC 11168)
gi|6968908|emb|CAB73904.1| hypothetical protein Cj1482c
[Campylobacter jejuni subsp. jejuni NCTC 11168]
Length = 788
Score = 32.0 bits (71), Expect = 4.2
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = -2
Query: 123 FWYHKIFVYACIQDIVEFCLILDAKCDCEYYE 28
F YH +++ D +EF D KCD EY+E
Sbjct: 335 FDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFE 366
>gb|EAA05538.1| agCP10604 [Anopheles gambiae str. PEST]
Length = 372
Score = 31.6 bits (70), Expect = 5.5
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -1
Query: 151 PRMFQRFNIILVPQDICLCMYS--GYCGVL 68
PR+ F +L+ D+CLC Y+ G+CGVL
Sbjct: 149 PRLRAAFPELLIACDVCLCPYTDHGHCGVL 178
>ref|ZP_00129368.1| hypothetical protein [Desulfovibrio desulfuricans G20]
Length = 362
Score = 31.6 bits (70), Expect = 5.5
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -1
Query: 148 RMFQRFNIILVPQDICLCMYS--GYCGVL 68
R+ +RF +LV D+CLC Y+ G+CG+L
Sbjct: 137 RLKERFPDLLVITDVCLCEYTSHGHCGLL 165
>ref|NP_181534.1| CHP-rich zinc finger protein, putative; protein id: At2g40050.1
[Arabidopsis thaliana] gi|25408662|pir||F84824
hypothetical protein At2g40050 [imported] - Arabidopsis
thaliana gi|2088661|gb|AAB95290.1| hypothetical protein
[Arabidopsis thaliana]
Length = 609
Score = 30.8 bits (68), Expect = 9.5
Identities = 18/49 (36%), Positives = 26/49 (52%)
Frame = -2
Query: 192 VECIHS*IISTYPGHACSRGSISFWYHKIFVYACIQDIVEFCLILDAKC 46
+E I+S +T+ +AC RGSI F YH C ++ F LD +C
Sbjct: 398 LEVINSFTYNTFRCNACDRGSIGFAYH------CRMEVCNF-FKLDVRC 439
>gb|AAO37142.1| hypothetical protein [Arabidopsis thaliana]
Length = 432
Score = 30.8 bits (68), Expect = 9.5
Identities = 18/49 (36%), Positives = 26/49 (52%)
Frame = -2
Query: 192 VECIHS*IISTYPGHACSRGSISFWYHKIFVYACIQDIVEFCLILDAKC 46
+E I+S +T+ +AC RGSI F YH C ++ F LD +C
Sbjct: 221 LEVINSFTYNTFRCNACDRGSIGFAYH------CRMEVCNF-FKLDVRC 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,147,327
Number of Sequences: 1393205
Number of extensions: 9081307
Number of successful extensions: 25412
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25410
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
