Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007723A_C01 KMC007723A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D71404 hypothetical protein - Arabidopsis thaliana gi|22447... 35 0.72
gb|AAM12502.1|AF411209_1 glutathione peroxidase [Brassica napus] 33 1.6
ref|NP_195170.1| putative serine threonine protein kinase; prote... 32 3.6
dbj|BAC43092.1| putative serine/threonine protein kinase [Arabid... 32 3.6
>pir||D71404 hypothetical protein - Arabidopsis thaliana
gi|2244783|emb|CAB10206.1| hypothetical protein
[Arabidopsis thaliana] gi|7268132|emb|CAB78469.1|
hypothetical protein [Arabidopsis thaliana]
Length = 255
Score = 34.7 bits (78), Expect = 0.72
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +1
Query: 52 IH*CEQYTACNDETST-----SGLNADITNPPPTYSACLVPHERFTLDLKTTLNQKQQHE 216
I+ +Q +CN E S SG++ DI N + CL+ + L + + Q+H
Sbjct: 132 IYSMKQPVSCNREHSEIGICLSGIDDDIQNDGKCWKFCLMVAKSGVLCIGSIQIDGQKHT 191
Query: 217 ASLLSANLGVCCSKKKKKTSECVPN 291
A + + +CC K+ C+PN
Sbjct: 192 APWIPEDNSICC-KEHPSVGRCLPN 215
>gb|AAM12502.1|AF411209_1 glutathione peroxidase [Brassica napus]
Length = 232
Score = 33.5 bits (75), Expect = 1.6
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 100 SGLNADITNPPPTYSACLVPHERF-TLDLKTTLNQK--QQHEASLLSANLGVCCSKKKKK 270
SG A NPPPT SA LVP R + +LK ++ K +H S NL V ++K
Sbjct: 14 SGFAATKPNPPPTCSAFLVPKRRSNSRNLKNGVSLKSWNKHGFQFTSRNLSVYARATEEK 73
Query: 271 T 273
T
Sbjct: 74 T 74
>ref|NP_195170.1| putative serine threonine protein kinase; protein id: At4g34440.1
[Arabidopsis thaliana] gi|7488206|pir||T05264 probable
serine/threonine-specific protein kinase (EC 2.7.1.-)
T4L20.20 - Arabidopsis thaliana
gi|3641836|emb|CAA18823.1| putative serine/threonine
protein kinase [Arabidopsis thaliana]
gi|7270394|emb|CAB80161.1| putative serine/threonine
protein kinase [Arabidopsis thaliana]
Length = 674
Score = 32.3 bits (72), Expect = 3.6
Identities = 16/37 (43%), Positives = 23/37 (61%)
Frame = +1
Query: 223 LLSANLGVCCSKKKKKTSECVPNTSKHMHIYS*SCYG 333
LL+ + +CC++KKKK S V HMH Y+ + YG
Sbjct: 184 LLAVCICICCNRKKKKKSPQV----NHMHYYNNNPYG 216
>dbj|BAC43092.1| putative serine/threonine protein kinase [Arabidopsis thaliana]
gi|29029022|gb|AAO64890.1| At4g34440 [Arabidopsis
thaliana]
Length = 670
Score = 32.3 bits (72), Expect = 3.6
Identities = 16/37 (43%), Positives = 23/37 (61%)
Frame = +1
Query: 223 LLSANLGVCCSKKKKKTSECVPNTSKHMHIYS*SCYG 333
LL+ + +CC++KKKK S V HMH Y+ + YG
Sbjct: 202 LLAVCICICCNRKKKKKSPQV----NHMHYYNNNPYG 234
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,783,593
Number of Sequences: 1393205
Number of extensions: 9486889
Number of successful extensions: 18039
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18030
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
