Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007655A_C01 KMC007655A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_594698.1| hypothetical protein [Schizosaccharomyces pombe... 35 0.46
dbj|BAA06714.1| neuraminidase [Influenza A virus] 34 1.3
gb|AAM12548.1|AF488776_1 dapper 1 [Xenopus laevis] 33 2.3
gb|EAA08186.1| agCP1712 [Anopheles gambiae str. PEST] 32 3.9
sp|P55013|S122_SQUAC Solute carrier family 12 member 2 (Bumetani... 32 5.0
>ref|NP_594698.1| hypothetical protein [Schizosaccharomyces pombe]
gi|8347060|emb|CAB93846.1| hypothetical protein
[Schizosaccharomyces pombe]
Length = 340
Score = 35.4 bits (80), Expect = 0.46
Identities = 23/93 (24%), Positives = 46/93 (48%)
Frame = -1
Query: 396 SDVDGSCDPVTLTGPATVGGVFKDDKGGSKAFGVMMTLVVLCLLKFWLLSMVLG*VPTGV 217
S++ C+ V G A KD G++ V +T ++ L+ FW +S + G
Sbjct: 13 SELSNDCETVNFRGIAYKCFFTKDQVKGTRL--VRLTNYLMLLVNFWQISHLTG------ 64
Query: 216 GRFSFIMFRVLYIYNSTAVWLAKLGSKSISGLV 118
G F+F++ + L + +W+ + ++++S LV
Sbjct: 65 GLFNFLVSQALNEHGLDLLWIIMVVAQTLSALV 97
>dbj|BAA06714.1| neuraminidase [Influenza A virus]
Length = 470
Score = 33.9 bits (76), Expect = 1.3
Identities = 15/26 (57%), Positives = 17/26 (64%)
Frame = -1
Query: 414 GLSPPPSDVDGSCDPVTLTGPATVGG 337
G +PPP D GSCDPVT+ G V G
Sbjct: 323 GDNPPPKDGKGSCDPVTVDGADGVKG 348
>gb|AAM12548.1|AF488776_1 dapper 1 [Xenopus laevis]
Length = 824
Score = 33.1 bits (74), Expect = 2.3
Identities = 26/85 (30%), Positives = 38/85 (44%)
Frame = +1
Query: 160 NSCRIINIQYSEHDETEPPNSSGYSP*DHA*QPEFQQTEDNQGHHYSKSFGSSFIIFKNS 339
N RI + EH ET+ SSG F + D S S S F +S
Sbjct: 121 NDLRIDVEKTEEHLETDSRPSSG-----------FYELSDGTSGSLSNSSNSVFSECLSS 169
Query: 340 THRSRSC*CHGITTSINITGGRGQT 414
H S +C C+ + TS+N+T G+ ++
Sbjct: 170 CHSS-TCFCNPLETSLNLTDGQAKS 193
>gb|EAA08186.1| agCP1712 [Anopheles gambiae str. PEST]
Length = 795
Score = 32.3 bits (72), Expect = 3.9
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 321 YHL*KLHPP*PVLLVSRDHNFHQHHWGEGTNQEIE*CNSY 440
+HL HPP V HN H HH G G + E+E +SY
Sbjct: 53 HHLHHHHPPSSV-----HHNTHHHHGGGGVSLELEPLDSY 87
>sp|P55013|S122_SQUAC Solute carrier family 12 member 2 (Bumetanide-sensitive
sodium-(potassium)-chloride cotransporter 1) (NA-K-CL
symporter) (NKCC) gi|539461|pir||A53491
bumetanide-sensitive Na-K-C1 cotransporter - spiny
dogfish gi|454097|gb|AAB60617.1| bumetanide-sensitive
Na-K-Cl cotransport protein
Length = 1191
Score = 32.0 bits (71), Expect = 5.0
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Frame = +2
Query: 293 ITPKALDPPLSSLKTPPTVAGPVSVTGS-QLPSTSLGGGDKPRD*MMQQLSIY 448
+ P + +PPLSS + PP + S G Q PS S+ G + D MM + S++
Sbjct: 111 VDPASDEPPLSSQQQPPPPSSASSAHGGHQPPSESMNGYPQNGDTMMSEGSLH 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,366,371
Number of Sequences: 1393205
Number of extensions: 10367894
Number of successful extensions: 26632
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 25479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26577
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
