Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007622A_C01 KMC007622A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD22252.1| maturase [Hydrolea ovata] 32 3.8
ref|NP_681442.1| ORF_ID:tlr0653~hypothetical protein [Thermosyne... 32 6.5
gb|AAK94643.1| maturase K [Simmondsia chinensis] 31 8.5
>emb|CAD22252.1| maturase [Hydrolea ovata]
Length = 478
Score = 32.3 bits (72), Expect = 3.8
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Frame = +3
Query: 159 QRIFYFIFCSSTWLYEQTFRHTIFDLSVLRYTDLQALI*TKPRFRKHEPTI---SDGAQS 329
QR F+F++ W YE F S LR T +AL+ +RK E + S Q+
Sbjct: 178 QRFFFFLYNFHVWEYESIFVFLRNQTSYLRSTSYRALLERIYFYRKIERLVDVFSKDCQA 237
Query: 330 SMFVIHEKARDPSISHVRVHRSAMFCQNAFNLCISILWK 446
++++ ++P + +VR ++ + L I WK
Sbjct: 238 NLWLF----KEPFMHYVRYQGKSILASKSTPLLIK-KWK 271
>ref|NP_681442.1| ORF_ID:tlr0653~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22294374|dbj|BAC08204.1|
ORF_ID:tlr0653~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 129
Score = 31.6 bits (70), Expect = 6.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 425 VHLDPMEKPCNIYRKKPRFY*ECQIT 502
+H DP+ + C IY +PRF C++T
Sbjct: 47 IHFDPLSRRCRIYENRPRF---CRVT 69
>gb|AAK94643.1| maturase K [Simmondsia chinensis]
Length = 281
Score = 31.2 bits (69), Expect = 8.5
Identities = 39/148 (26%), Positives = 58/148 (38%), Gaps = 22/148 (14%)
Frame = +3
Query: 159 QRIFYFIFCSSTWLYEQTFRHTIFDLSVLRYTDLQALI*TKPRFRKHEPTISDGAQSSMF 338
QR+F F++ S W YE F S LR T AL+ + K E + + +
Sbjct: 64 QRLFLFLYNSHIWEYESLFVFFRNQSSHLRSTSSGALLGRSYFYGKLENLVKVFTK-DLP 122
Query: 339 VIHEKARDPSISHVRV-HRSAMFCQNAFNL-------------CISILWKSPAIF----T 464
VI +DP + +VR +S + + F L C +W P
Sbjct: 123 VILRFCKDPFMHYVRYQEKSILASKGTFYLMNKWKYYLVNLWQCHFSVWSQPRRIYINQL 182
Query: 465 GKN----QGFTKNVRLHNKA*QNIMVRN 536
KN GF NVRL+ ++ M+ N
Sbjct: 183 SKNSLDFMGFLSNVRLNLSVVRSQMLEN 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,455,322
Number of Sequences: 1393205
Number of extensions: 8672464
Number of successful extensions: 20859
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20835
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
