Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007608A_C01 KMC007608A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG00940.1| unknown [Glycine max] 231 4e-60
ref|NP_567775.1| putative protein; protein id: At4g27450.1, supp... 223 1e-57
pir||T08937 hypothetical protein F27G19.50 - Arabidopsis thalian... 213 1e-54
ref|NP_566513.1| expressed protein; protein id: At3g15450.1, sup... 184 5e-46
pir||S41890 hypothetical protein - garden asparagus gi|452714|em... 181 6e-45
>gb|AAG00940.1| unknown [Glycine max]
Length = 256
Score = 231 bits (589), Expect = 4e-60
Identities = 108/124 (87%), Positives = 118/124 (95%), Gaps = 1/124 (0%)
Frame = -2
Query: 523 DGSFAFVVYD-SKVGTVFAALGSDGGLKLYWGIAADGSVVISDDLDVIKEGCAKSFAPFP 347
DGSF VVYD ++ G+VFAALGSDGG+KLYWGIAADGSVVISDDL+VIKEGCAKSFAPFP
Sbjct: 133 DGSFGLVVYDQARFGSVFAALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFP 192
Query: 346 TGCMFHSEGGLMSFEHPMNKLKAMPRVDSEGVMCGANFKVDKYTRVHSIPRVGSQAHWME 167
TGCMFHSEGGLMSFEHPMNKLKAMPRVDSEG MCGANFKVDK+ RV+SIPRVGSQ++WME
Sbjct: 193 TGCMFHSEGGLMSFEHPMNKLKAMPRVDSEGAMCGANFKVDKFARVNSIPRVGSQSNWME 252
Query: 166 WEQH 155
W+QH
Sbjct: 253 WDQH 256
>ref|NP_567775.1| putative protein; protein id: At4g27450.1, supported by cDNA:
35207., supported by cDNA: gi_14030722, supported by
cDNA: gi_15028056, supported by cDNA: gi_20259058
[Arabidopsis thaliana]
gi|14030723|gb|AAK53036.1|AF375452_1 AT4g27450/F27G19_50
[Arabidopsis thaliana] gi|15028057|gb|AAK76559.1|
unknown protein [Arabidopsis thaliana]
gi|20259059|gb|AAM14245.1| unknown protein [Arabidopsis
thaliana] gi|21593019|gb|AAM64968.1| unknown
[Arabidopsis thaliana]
Length = 250
Score = 223 bits (568), Expect = 1e-57
Identities = 104/117 (88%), Positives = 112/117 (94%)
Frame = -2
Query: 523 DGSFAFVVYDSKVGTVFAALGSDGGLKLYWGIAADGSVVISDDLDVIKEGCAKSFAPFPT 344
DGSF+FVVYDSK G+VF ALGSDGG+KLYWGIAADGSVVISDDLDVIKEGCAKSFAPFPT
Sbjct: 132 DGSFSFVVYDSKAGSVFTALGSDGGVKLYWGIAADGSVVISDDLDVIKEGCAKSFAPFPT 191
Query: 343 GCMFHSEGGLMSFEHPMNKLKAMPRVDSEGVMCGANFKVDKYTRVHSIPRVGSQAHW 173
GCMFHSEGGLMSFEHPMNK+KAMPRVDSEGV+CGANFKVD Y RV+SIPR GS+A+W
Sbjct: 192 GCMFHSEGGLMSFEHPMNKIKAMPRVDSEGVLCGANFKVDVYNRVNSIPRRGSEANW 248
>pir||T08937 hypothetical protein F27G19.50 - Arabidopsis thaliana
gi|4972070|emb|CAB43877.1| putative protein [Arabidopsis
thaliana] gi|7269599|emb|CAB81395.1| putative protein
[Arabidopsis thaliana]
Length = 266
Score = 213 bits (541), Expect = 1e-54
Identities = 104/133 (78%), Positives = 112/133 (84%), Gaps = 16/133 (12%)
Frame = -2
Query: 523 DGSFAFVVYDSKVGTVFAAL----------------GSDGGLKLYWGIAADGSVVISDDL 392
DGSF+FVVYDSK G+VF AL GSDGG+KLYWGIAADGSVVISDDL
Sbjct: 132 DGSFSFVVYDSKAGSVFTALVLIHKISPRLLELNFNGSDGGVKLYWGIAADGSVVISDDL 191
Query: 391 DVIKEGCAKSFAPFPTGCMFHSEGGLMSFEHPMNKLKAMPRVDSEGVMCGANFKVDKYTR 212
DVIKEGCAKSFAPFPTGCMFHSEGGLMSFEHPMNK+KAMPRVDSEGV+CGANFKVD Y R
Sbjct: 192 DVIKEGCAKSFAPFPTGCMFHSEGGLMSFEHPMNKIKAMPRVDSEGVLCGANFKVDVYNR 251
Query: 211 VHSIPRVGSQAHW 173
V+SIPR GS+A+W
Sbjct: 252 VNSIPRRGSEANW 264
>ref|NP_566513.1| expressed protein; protein id: At3g15450.1, supported by cDNA:
gi_14335087 [Arabidopsis thaliana]
gi|7021730|gb|AAF35411.1| unknown protein [Arabidopsis
thaliana] gi|14335088|gb|AAK59823.1| AT3g15450/MJK13_11
[Arabidopsis thaliana] gi|15795110|dbj|BAB02374.1|
gene_id:MJK13.11~unknown protein [Arabidopsis thaliana]
gi|23308201|gb|AAN18070.1| At3g15450/MJK13_11
[Arabidopsis thaliana]
Length = 253
Score = 184 bits (467), Expect = 5e-46
Identities = 81/117 (69%), Positives = 102/117 (86%)
Frame = -2
Query: 523 DGSFAFVVYDSKVGTVFAALGSDGGLKLYWGIAADGSVVISDDLDVIKEGCAKSFAPFPT 344
+GSFAFVVYD++ +VF+AL SDGG LYWGI+ DGSVV+SDD+ +IK+GCAKSFAPFP
Sbjct: 131 EGSFAFVVYDTQTSSVFSALSSDGGESLYWGISGDGSVVMSDDIQIIKQGCAKSFAPFPN 190
Query: 343 GCMFHSEGGLMSFEHPMNKLKAMPRVDSEGVMCGANFKVDKYTRVHSIPRVGSQAHW 173
GCMFHSE GL SF+HP N +KAMPR+DSEGV+CGA+FKVD ++++SIPR GS+A+W
Sbjct: 191 GCMFHSETGLKSFDHPTNMMKAMPRIDSEGVLCGASFKVDACSKINSIPRRGSEANW 247
>pir||S41890 hypothetical protein - garden asparagus gi|452714|emb|CAA54526.1|
unknown [Asparagus officinalis]
Length = 259
Score = 181 bits (458), Expect = 6e-45
Identities = 81/121 (66%), Positives = 97/121 (79%)
Frame = -2
Query: 523 DGSFAFVVYDSKVGTVFAALGSDGGLKLYWGIAADGSVVISDDLDVIKEGCAKSFAPFPT 344
+GSFAFV+YD+K G+VFAA DG + L+WG+A DGS VI DDL+V+K GC KSFAPFP
Sbjct: 135 NGSFAFVIYDNKTGSVFAAQSYDGRVPLFWGVACDGSAVICDDLNVMKSGCGKSFAPFPN 194
Query: 343 GCMFHSEGGLMSFEHPMNKLKAMPRVDSEGVMCGANFKVDKYTRVHSIPRVGSQAHWMEW 164
GCMF SEGGL SFE PMNK+KA+PRVDSEG MCG+ FKVD T++ ++PRVGS A W W
Sbjct: 195 GCMFSSEGGLKSFERPMNKMKAVPRVDSEGTMCGSFFKVDSCTKISTMPRVGSSADWTSW 254
Query: 163 E 161
E
Sbjct: 255 E 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,288,213
Number of Sequences: 1393205
Number of extensions: 10376277
Number of successful extensions: 32045
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 30781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31983
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
