Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007597A_C01 KMC007597A_c01
(721 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA13937.1| ebiP2892 [Anopheles gambiae str. PEST] 33 4.0
ref|NP_624670.1| possible racemase [Streptomyces coelicolor A3(2... 33 5.2
gb|AAK56918.1| IGF2R [Homo sapiens] gi|15628185|gb|AAL04402.1| i... 32 6.8
pir||A28372 insulin-like growth factor 2 receptor precursor - human 32 6.8
gb|AAA59866.1| mannose 6-phosphate receptor 32 6.8
>gb|EAA13937.1| ebiP2892 [Anopheles gambiae str. PEST]
Length = 2742
Score = 33.1 bits (74), Expect = 4.0
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = +3
Query: 234 DVELGLTPLTLPIGPVGPPPRSARRPE 314
D+ L + PL +P+GP+GP P + +PE
Sbjct: 836 DMSLSMAPLHIPLGPLGPVPVAVPQPE 862
>ref|NP_624670.1| possible racemase [Streptomyces coelicolor A3(2)]
gi|5881916|emb|CAB55709.1| possible racemase
[Streptomyces coelicolor A3(2)]
Length = 416
Score = 32.7 bits (73), Expect = 5.2
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 352 WARPQGPSPWSTSSGRRADLGGGPTGPIGRVRGVKPN 242
WARP GP +G R GP GP RVR P+
Sbjct: 358 WARPDGPHVRPRDAGLRLVPEPGPPGPAARVRAGTPS 394
>gb|AAK56918.1| IGF2R [Homo sapiens] gi|15628185|gb|AAL04402.1| insulin-like growth
factor II receptor [Homo sapiens]
Length = 2491
Score = 32.3 bits (72), Expect = 6.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 140 PL*REKVTEFQPCYFSNEKRVIYNWYSSPIYRCGVGFDASNP 265
PL + + EF + + + + +++WY+S + GVGFD+ NP
Sbjct: 2250 PLVEDGIPEFS--HETADCQYLFSWYTSAVCPLGVGFDSENP 2289
>pir||A28372 insulin-like growth factor 2 receptor precursor - human
Length = 2491
Score = 32.3 bits (72), Expect = 6.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 140 PL*REKVTEFQPCYFSNEKRVIYNWYSSPIYRCGVGFDASNP 265
PL + + EF + + + + +++WY+S + GVGFD+ NP
Sbjct: 2250 PLVEDGIPEFS--HETADCQYLFSWYTSAVCPLGVGFDSENP 2289
>gb|AAA59866.1| mannose 6-phosphate receptor
Length = 2491
Score = 32.3 bits (72), Expect = 6.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 140 PL*REKVTEFQPCYFSNEKRVIYNWYSSPIYRCGVGFDASNP 265
PL + + EF + + + + +++WY+S + GVGFD+ NP
Sbjct: 2250 PLVEDGIPEFS--HETADCQYLFSWYTSAVCPLGVGFDSENP 2289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 633,532,049
Number of Sequences: 1393205
Number of extensions: 14176171
Number of successful extensions: 43346
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 40527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43236
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
