Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007583A_C01 KMC007583A_c01
(728 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194831.1| putative protein; protein id: At4g31020.1 [Arab... 131 8e-30
gb|AAO42181.1| unknown protein [Arabidopsis thaliana] gi|2897354... 131 8e-30
ref|NP_180009.1| hypothetical protein; protein id: At2g24320.1 [... 121 9e-27
ref|NP_196943.1| putative protein; protein id: At5g14390.1, supp... 75 9e-13
ref|NP_189657.1| unknown protein; protein id: At3g30380.1 [Arabi... 73 4e-12
>ref|NP_194831.1| putative protein; protein id: At4g31020.1 [Arabidopsis thaliana]
gi|25352163|pir||C85363 hypothetical protein AT4g31020
[imported] - Arabidopsis thaliana
gi|2980764|emb|CAA18191.1| putative protein [Arabidopsis
thaliana] gi|7270004|emb|CAB79820.1| putative protein
[Arabidopsis thaliana]
Length = 307
Score = 131 bits (330), Expect = 8e-30
Identities = 55/74 (74%), Positives = 67/74 (90%)
Frame = -2
Query: 727 KRLWELSKEKYDPLWVKXGGHCNLETFPEYLKYLRKFINAMEKLAITRPTNKQLTQNPSI 548
KRLWEL+KEKYDPLWVK GGHCNLET+PEY+K+L+KF+NAMEKL++T P KQLT PSI
Sbjct: 234 KRLWELAKEKYDPLWVKGGGHCNLETYPEYIKHLKKFVNAMEKLSLTNPPPKQLTNEPSI 293
Query: 547 TEARHNKCLRFGKK 506
TE +HN+CL+FGK+
Sbjct: 294 TETKHNRCLKFGKR 307
>gb|AAO42181.1| unknown protein [Arabidopsis thaliana] gi|28973543|gb|AAO64096.1|
unknown protein [Arabidopsis thaliana]
Length = 294
Score = 131 bits (330), Expect = 8e-30
Identities = 55/74 (74%), Positives = 67/74 (90%)
Frame = -2
Query: 727 KRLWELSKEKYDPLWVKXGGHCNLETFPEYLKYLRKFINAMEKLAITRPTNKQLTQNPSI 548
KRLWEL+KEKYDPLWVK GGHCNLET+PEY+K+L+KF+NAMEKL++T P KQLT PSI
Sbjct: 221 KRLWELAKEKYDPLWVKGGGHCNLETYPEYIKHLKKFVNAMEKLSLTNPPPKQLTNEPSI 280
Query: 547 TEARHNKCLRFGKK 506
TE +HN+CL+FGK+
Sbjct: 281 TETKHNRCLKFGKR 294
>ref|NP_180009.1| hypothetical protein; protein id: At2g24320.1 [Arabidopsis
thaliana] gi|25352161|pir||C84635 hypothetical protein
At2g24320 [imported] - Arabidopsis thaliana
gi|4337191|gb|AAD18105.1| hypothetical protein
[Arabidopsis thaliana]
Length = 316
Score = 121 bits (304), Expect = 9e-27
Identities = 51/74 (68%), Positives = 62/74 (82%)
Frame = -2
Query: 727 KRLWELSKEKYDPLWVKXGGHCNLETFPEYLKYLRKFINAMEKLAITRPTNKQLTQNPSI 548
KRLWEL+K+KYDPLWVK GGHCNLET+PEY+K++RKF+NAMEKLA+ P NKQ PSI
Sbjct: 243 KRLWELAKDKYDPLWVKGGGHCNLETYPEYIKHMRKFMNAMEKLALNNPPNKQQNDEPSI 302
Query: 547 TEARHNKCLRFGKK 506
E + N+CLRF K+
Sbjct: 303 KETKQNRCLRFSKR 316
>ref|NP_196943.1| putative protein; protein id: At5g14390.1, supported by cDNA:
gi_17529313 [Arabidopsis thaliana]
gi|11282307|pir||T48612 hypothetical protein F18O22.180
- Arabidopsis thaliana gi|7573464|emb|CAB87778.1|
putative protein [Arabidopsis thaliana]
gi|17529314|gb|AAL38884.1| unknown protein [Arabidopsis
thaliana] gi|21436177|gb|AAM51376.1| unknown protein
[Arabidopsis thaliana]
Length = 369
Score = 75.1 bits (183), Expect = 9e-13
Identities = 32/62 (51%), Positives = 46/62 (73%)
Frame = -2
Query: 727 KRLWELSKEKYDPLWVKXGGHCNLETFPEYLKYLRKFINAMEKLAITRPTNKQLTQNPSI 548
K+LWELSKEKY+PLW++ G HC+LE +PEY+K+L+KFI +E+ +R + QL + S
Sbjct: 221 KQLWELSKEKYEPLWLEGGNHCDLEHYPEYIKHLKKFITTVERDLSSRASTAQLEKQSSD 280
Query: 547 TE 542
E
Sbjct: 281 LE 282
>ref|NP_189657.1| unknown protein; protein id: At3g30380.1 [Arabidopsis thaliana]
gi|9294341|dbj|BAB02238.1| contains similarity to
unknown protein~gb|AAF01552.1~gene_id:T6J22.18
[Arabidopsis thaliana]
Length = 399
Score = 73.2 bits (178), Expect = 4e-12
Identities = 31/56 (55%), Positives = 44/56 (78%)
Frame = -2
Query: 727 KRLWELSKEKYDPLWVKXGGHCNLETFPEYLKYLRKFINAMEKLAITRPTNKQLTQ 560
K+L+EL KEKY+PLW+K G HC+LE +P+Y+K+LRKF++A+EK I R LT+
Sbjct: 220 KQLFELCKEKYEPLWIKGGNHCDLELYPQYIKHLRKFVSAIEKSPILRNGPVPLTE 275
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 599,958,615
Number of Sequences: 1393205
Number of extensions: 12124839
Number of successful extensions: 26063
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 25300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26051
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
