Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007578A_C01 KMC007578A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG00940.1| unknown [Glycine max] 102 1e-44
pir||T08937 hypothetical protein F27G19.50 - Arabidopsis thalian... 99 3e-36
ref|NP_567775.1| putative protein; protein id: At4g27450.1, supp... 99 3e-36
pir||T06355 hypothetical protein - tomato gi|643469|gb|AAA61967.... 77 2e-29
ref|NP_566513.1| expressed protein; protein id: At3g15450.1, sup... 84 5e-29
>gb|AAG00940.1| unknown [Glycine max]
Length = 256
Score = 102 bits (254), Expect(2) = 1e-44
Identities = 45/48 (93%), Positives = 48/48 (99%)
Frame = -1
Query: 407 PMHKLKAMPRIDSEGAMCGANFKVDKYARVNSIPRVGSQSNWMEWDQH 264
PM+KLKAMPR+DSEGAMCGANFKVDK+ARVNSIPRVGSQSNWMEWDQH
Sbjct: 209 PMNKLKAMPRVDSEGAMCGANFKVDKFARVNSIPRVGSQSNWMEWDQH 256
Score = 99.4 bits (246), Expect(2) = 1e-44
Identities = 45/48 (93%), Positives = 48/48 (99%)
Frame = -2
Query: 556 KLYWGIAADGSVVISDDLKVIKEGCAKSFAPFPTGCIFHSEGGLVSFE 413
KLYWGIAADGSVVISDDL+VIKEGCAKSFAPFPTGC+FHSEGGL+SFE
Sbjct: 160 KLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPTGCMFHSEGGLMSFE 207
>pir||T08937 hypothetical protein F27G19.50 - Arabidopsis thaliana
gi|4972070|emb|CAB43877.1| putative protein [Arabidopsis
thaliana] gi|7269599|emb|CAB81395.1| putative protein
[Arabidopsis thaliana]
Length = 266
Score = 98.6 bits (244), Expect(2) = 3e-36
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = -2
Query: 556 KLYWGIAADGSVVISDDLKVIKEGCAKSFAPFPTGCIFHSEGGLVSFE 413
KLYWGIAADGSVVISDDL VIKEGCAKSFAPFPTGC+FHSEGGL+SFE
Sbjct: 174 KLYWGIAADGSVVISDDLDVIKEGCAKSFAPFPTGCMFHSEGGLMSFE 221
Score = 75.1 bits (183), Expect(2) = 3e-36
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = -1
Query: 407 PMHKLKAMPRIDSEGAMCGANFKVDKYARVNSIPRVGSQSNW 282
PM+K+KAMPR+DSEG +CGANFKVD Y RVNSIPR GS++NW
Sbjct: 223 PMNKIKAMPRVDSEGVLCGANFKVDVYNRVNSIPRRGSEANW 264
>ref|NP_567775.1| putative protein; protein id: At4g27450.1, supported by cDNA:
35207., supported by cDNA: gi_14030722, supported by
cDNA: gi_15028056, supported by cDNA: gi_20259058
[Arabidopsis thaliana]
gi|14030723|gb|AAK53036.1|AF375452_1 AT4g27450/F27G19_50
[Arabidopsis thaliana] gi|15028057|gb|AAK76559.1|
unknown protein [Arabidopsis thaliana]
gi|20259059|gb|AAM14245.1| unknown protein [Arabidopsis
thaliana] gi|21593019|gb|AAM64968.1| unknown
[Arabidopsis thaliana]
Length = 250
Score = 98.6 bits (244), Expect(2) = 3e-36
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = -2
Query: 556 KLYWGIAADGSVVISDDLKVIKEGCAKSFAPFPTGCIFHSEGGLVSFE 413
KLYWGIAADGSVVISDDL VIKEGCAKSFAPFPTGC+FHSEGGL+SFE
Sbjct: 158 KLYWGIAADGSVVISDDLDVIKEGCAKSFAPFPTGCMFHSEGGLMSFE 205
Score = 75.1 bits (183), Expect(2) = 3e-36
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = -1
Query: 407 PMHKLKAMPRIDSEGAMCGANFKVDKYARVNSIPRVGSQSNW 282
PM+K+KAMPR+DSEG +CGANFKVD Y RVNSIPR GS++NW
Sbjct: 207 PMNKIKAMPRVDSEGVLCGANFKVDVYNRVNSIPRRGSEANW 248
>pir||T06355 hypothetical protein - tomato gi|643469|gb|AAA61967.1| unknown
Length = 295
Score = 77.4 bits (189), Expect(2) = 2e-29
Identities = 32/47 (68%), Positives = 40/47 (85%)
Frame = -1
Query: 407 PMHKLKAMPRIDSEGAMCGANFKVDKYARVNSIPRVGSQSNWMEWDQ 267
P +K+KAMPR+DSEG+MCGA FKVD Y++VNS+PRVGS +NW W Q
Sbjct: 249 PSYKMKAMPRVDSEGSMCGAYFKVDVYSKVNSMPRVGSSANWATWGQ 295
Score = 73.2 bits (178), Expect(2) = 2e-29
Identities = 32/48 (66%), Positives = 40/48 (82%)
Frame = -2
Query: 556 KLYWGIAADGSVVISDDLKVIKEGCAKSFAPFPTGCIFHSEGGLVSFE 413
KL+WGIA DGSV+ISD++ IK C KSFAPFP+GC++HSE GL S+E
Sbjct: 200 KLFWGIAFDGSVMISDNVDHIKASCIKSFAPFPSGCMYHSETGLKSYE 247
>ref|NP_566513.1| expressed protein; protein id: At3g15450.1, supported by cDNA:
gi_14335087 [Arabidopsis thaliana]
gi|7021730|gb|AAF35411.1| unknown protein [Arabidopsis
thaliana] gi|14335088|gb|AAK59823.1| AT3g15450/MJK13_11
[Arabidopsis thaliana] gi|15795110|dbj|BAB02374.1|
gene_id:MJK13.11~unknown protein [Arabidopsis thaliana]
gi|23308201|gb|AAN18070.1| At3g15450/MJK13_11
[Arabidopsis thaliana]
Length = 253
Score = 84.0 bits (206), Expect(2) = 5e-29
Identities = 35/47 (74%), Positives = 43/47 (91%)
Frame = -2
Query: 553 LYWGIAADGSVVISDDLKVIKEGCAKSFAPFPTGCIFHSEGGLVSFE 413
LYWGI+ DGSVV+SDD+++IK+GCAKSFAPFP GC+FHSE GL SF+
Sbjct: 158 LYWGISGDGSVVMSDDIQIIKQGCAKSFAPFPNGCMFHSETGLKSFD 204
Score = 65.5 bits (158), Expect(2) = 5e-29
Identities = 27/42 (64%), Positives = 36/42 (85%)
Frame = -1
Query: 407 PMHKLKAMPRIDSEGAMCGANFKVDKYARVNSIPRVGSQSNW 282
P + +KAMPRIDSEG +CGA+FKVD +++NSIPR GS++NW
Sbjct: 206 PTNMMKAMPRIDSEGVLCGASFKVDACSKINSIPRRGSEANW 247
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,695,005
Number of Sequences: 1393205
Number of extensions: 11066801
Number of successful extensions: 24613
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 24025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24603
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
