Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007572A_C01 KMC007572A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T31611 hypothetical protein Y50E8A.g - Caenorhabditis elegans 37 0.13
gb|EAA33564.1| predicted protein [Neurospora crassa] 34 1.1
dbj|BAA90519.1| similar to transcription factor TFIIIA [Oryza sa... 34 1.4
sp|P13608|PGCA_BOVIN Aggrecan core protein precursor (Cartilage-... 33 1.8
ref|NP_776406.1| aggrecan 1 (chondroitin sulfate proteoglycan 1,... 33 1.8
>pir||T31611 hypothetical protein Y50E8A.g - Caenorhabditis elegans
Length = 1585
Score = 37.4 bits (85), Expect = 0.13
Identities = 29/88 (32%), Positives = 35/88 (38%), Gaps = 3/88 (3%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQ 366
PP P P+ P P+ + SSGGSAA G G + + GG
Sbjct: 1081 PPPPPPPAPAPAPAPSSGGYSGGSSGGSAAGGG--------------GGSSGGYSGGSAA 1126
Query: 365 VPGPAIYTPPANVP---PSHYGHYVGSS 291
P P PPA P PS G+ GSS
Sbjct: 1127 PPPPPPPPPPAPAPAPAPSSGGYSGGSS 1154
Score = 37.4 bits (85), Expect = 0.13
Identities = 29/88 (32%), Positives = 35/88 (38%), Gaps = 3/88 (3%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQ 366
PP P P+ P P+ + SSGGSAA G G + + GG
Sbjct: 980 PPPPPPPAPAPAPAPSSGGYSGGSSGGSAAGGG--------------GGSSGGYSGGSAA 1025
Query: 365 VPGPAIYTPPANVP---PSHYGHYVGSS 291
P P PPA P PS G+ GSS
Sbjct: 1026 PPPPPPPPPPAPAPAPAPSSGGYSGGSS 1053
Score = 35.8 bits (81), Expect = 0.37
Identities = 28/89 (31%), Positives = 33/89 (36%), Gaps = 3/89 (3%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQ 366
PP P P+ P P+ + SSGGSAA G G++ Y G
Sbjct: 1284 PPPPPPPAPAPAPAPSSGGYSGGSSGGSAAGGG-------------GGSSGGYSGGSAAP 1330
Query: 365 VPGPAIYTP---PANVPPSHYGHYVGSSS 288
P P P PA P G Y G SS
Sbjct: 1331 PPPPPPPPPPPAPAPAPAPSSGGYSGGSS 1359
Score = 35.8 bits (81), Expect = 0.37
Identities = 28/86 (32%), Positives = 33/86 (37%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQ 366
PP P P+ P P+ + SSGGSAA G G + + GG
Sbjct: 1387 PPPPPPPAPAPAPAPSSGGYSGGSSGGSAAGGG--------------GGSSGGYSGGSAA 1432
Query: 365 VPGPAIYTPPANVPPSHYGHYVGSSS 288
P P PA P S G Y G SS
Sbjct: 1433 PPPPPPAPAPAPAPSS--GGYSGGSS 1456
Score = 35.8 bits (81), Expect = 0.37
Identities = 28/89 (31%), Positives = 33/89 (36%), Gaps = 3/89 (3%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQ 366
PP P P+ P P+ + SSGGSAA G G++ Y G
Sbjct: 1130 PPPPPPPAPAPAPAPSSGGYSGGSSGGSAAGGG-------------GGSSGGYSGGSAAP 1176
Query: 365 VPGPAIYTP---PANVPPSHYGHYVGSSS 288
P P P PA P G Y G SS
Sbjct: 1177 PPPPPPPPPPPAPAPAPAPSSGGYSGGSS 1205
Score = 35.8 bits (81), Expect = 0.37
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQ 366
PP P P+ P P+ + SSGGSAA G G++ Y G
Sbjct: 925 PPPPPPPAPAPAPAPSSGGYSGASSGGSAAGGG-------------GGSSGGYSGGSAAP 971
Query: 365 VPGPAIYTPPANVPPS-------HYGHYVGSSS 288
P P PP PP+ G Y G SS
Sbjct: 972 PPPPPPPPPPPPPPPAPAPAPAPSSGGYSGGSS 1004
Score = 35.8 bits (81), Expect = 0.37
Identities = 28/89 (31%), Positives = 33/89 (36%), Gaps = 3/89 (3%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQ 366
PP P P+ P P+ + SSGGSAA G G++ Y G
Sbjct: 1181 PPPPPPPAPAPAPAPSSGGYSGGSSGGSAAGGG-------------GGSSGGYSGGSAAP 1227
Query: 365 VPGPAIYTP---PANVPPSHYGHYVGSSS 288
P P P PA P G Y G SS
Sbjct: 1228 PPPPPPPPPPPAPAPAPAPSSGGYSGGSS 1256
Score = 35.4 bits (80), Expect = 0.48
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQ 366
PP P P+ P P+ + SSGGSAA G G++ Y G
Sbjct: 1029 PPPPPPPAPAPAPAPSSGGYSGGSSGGSAAGGG-------------GGSSGGYSGGSTAP 1075
Query: 365 VPGPAIYTPPANVP-----PSHYGHYVGSS 291
P P PP P PS G+ GSS
Sbjct: 1076 PPPPPPPPPPPPAPAPAPAPSSGGYSGGSS 1105
Score = 35.0 bits (79), Expect = 0.62
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQ 366
PP P P+ P P+ + SSGGSAA G G++ Y G
Sbjct: 1484 PPPPPPPAPAPAPAPSSGGYSGGSSGGSAAGGG-------------GGSSGGYTGGSAAP 1530
Query: 365 VPGPAIYTPPANVP-----PSHYGHYVGSS 291
P P PP P PS G+ GSS
Sbjct: 1531 PPPPPPPPPPPPAPAPAPAPSSGGYSGGSS 1560
Score = 35.0 bits (79), Expect = 0.62
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQ 366
PP P P+ P P+ + SSGGSAA G G++ Y G
Sbjct: 1335 PPPPPPPAPAPAPAPSSGGYSGGSSGGSAAGGG-------------GGSSGGYTGGSAAP 1381
Query: 365 VPGPAIYTPPANVP-----PSHYGHYVGSS 291
P P PP P PS G+ GSS
Sbjct: 1382 PPPPPPPPPPPPAPAPAPAPSSGGYSGGSS 1411
Score = 35.0 bits (79), Expect = 0.62
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQ 366
PP P P+ P P+ + SSGGSAA G G++ Y G
Sbjct: 1232 PPPPPPPAPAPAPAPSSGGYSGGSSGGSAAGGG-------------GGSSGGYTGGSAAP 1278
Query: 365 VPGPAIYTPPANVP-----PSHYGHYVGSS 291
P P PP P PS G+ GSS
Sbjct: 1279 PPPPPPPPPPPPAPAPAPAPSSGGYSGGSS 1308
Score = 34.7 bits (78), Expect = 0.81
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAA--SAGVMGRQVLPVRAAYAGTADIYHHGGH 372
PP P P+ P P+ + SSGGSAA G G + G + + GG
Sbjct: 854 PPPPPPPAPAPAPAPSSGGYSGGSSGGSAAGGGGGSSGGYSGGSSSGGGGGSSGGYSGGS 913
Query: 371 YQVPGPAIYTPPANVPP--------SHYGHYVGSSS 288
+P P PP PP G Y G+SS
Sbjct: 914 AALPPPPPPPPPPPPPPPAPAPAPAPSSGGYSGASS 949
Score = 33.1 bits (74), Expect = 2.4
Identities = 28/90 (31%), Positives = 36/90 (39%), Gaps = 5/90 (5%)
Frame = -2
Query: 545 PPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIY--HHGGH 372
PP P P+ P P+ + SSG SAA G + ++ G + GG
Sbjct: 789 PPPPPPPPPAPAPAPSSGGYSGGSSGDSAAGGGGGSSRGYSEGSSSGGGGGSSGGYSGGS 848
Query: 371 YQVPGPAIYTPPANVP---PSHYGHYVGSS 291
P P PPA P PS G+ GSS
Sbjct: 849 AAPPPPPPPPPPAPAPAPAPSSGGYSGGSS 878
Score = 32.3 bits (72), Expect = 4.0
Identities = 27/89 (30%), Positives = 33/89 (36%), Gaps = 5/89 (5%)
Frame = -2
Query: 542 PQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQV 363
P P P+ P P+ + SSGGSAA G G++ Y G
Sbjct: 1433 PPPPPPAPAPAPAPSSGGYSGGSSGGSAAGGG-------------GGSSGGYTGGSAAPP 1479
Query: 362 PGPAIYTPPANVP-----PSHYGHYVGSS 291
P P PP P PS G+ GSS
Sbjct: 1480 PPPPPPPPPPPAPAPAPAPSSGGYSGGSS 1508
>gb|EAA33564.1| predicted protein [Neurospora crassa]
Length = 677
Score = 34.3 bits (77), Expect = 1.1
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Frame = -2
Query: 554 SKRPPQSKXPXPSERPRPNERYFQRRSSGGSAAS-----AGVMGRQVLPVRAAYAGTADI 390
++R P ++ PRP + + R GGS + + G Q+L AA A A
Sbjct: 536 ARRGPGRPKGAKNKNPRPRDPLHRVRDDGGSRVAKARPRSAANGEQILAAAAAAAAAA-- 593
Query: 389 YHHGGHYQVPGPAIYTPP-----ANV---PPSHYGHYVG 297
+ GG V G + PP ANV PP G+ G
Sbjct: 594 -NEGGQRPVEGMDVDVPPGGGAAANVLGQPPGQGGNMYG 631
>dbj|BAA90519.1| similar to transcription factor TFIIIA [Oryza sativa]
Length = 449
Score = 33.9 bits (76), Expect = 1.4
Identities = 24/73 (32%), Positives = 33/73 (44%), Gaps = 4/73 (5%)
Frame = -2
Query: 479 RSSGGSAASAGVMGRQVLPVRAAYAGTADIYHHGGHYQVPGPAIYTPPANVPP----SHY 312
R GGS+ + R + AA T D +GG + PA+ PPA PP +H
Sbjct: 8 RGDGGSSGGRALR-RLGMGAAAAAEATVDRRDNGGGQRRRPPALLPPPAAQPPPTPIAHV 66
Query: 311 GHYVGSSSLQSSH 273
VG ++ SSH
Sbjct: 67 AAAVGRAAANSSH 79
>sp|P13608|PGCA_BOVIN Aggrecan core protein precursor (Cartilage-specific proteoglycan core
protein) (CSPCP)
Length = 2364
Score = 33.5 bits (75), Expect = 1.8
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -2
Query: 554 SKRPPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADI 390
S++P S+ P PSE+P P+E F S S SA V R LP +G +I
Sbjct: 875 SEKPIPSEEPFPSEKPFPSEEPFP--SEEPSTLSAPVPSRTELPSSGEVSGVPEI 927
>ref|NP_776406.1| aggrecan 1 (chondroitin sulfate proteoglycan 1, large aggregating
proteoglycan, antigen identified by monoclonal antibody
A0122) [Bos taurus] gi|11276915|pir||T42630 aggrecan -
bovine gi|1730260|gb|AAB38524.1| aggrecan [Bos taurus]
Length = 2327
Score = 33.5 bits (75), Expect = 1.8
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -2
Query: 554 SKRPPQSKXPXPSERPRPNERYFQRRSSGGSAASAGVMGRQVLPVRAAYAGTADI 390
S++P S+ P PSE+P P+E F S S SA V R LP +G +I
Sbjct: 875 SEKPIPSEEPFPSEKPFPSEEPFP--SEEPSTLSAPVPSRTELPSSGEVSGVPEI 927
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,201,909
Number of Sequences: 1393205
Number of extensions: 11165354
Number of successful extensions: 31993
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 29525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31852
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
