Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007571A_C01 KMC007571A_c01
(747 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P21820|TPIS_COPJA Triosephosphate isomerase, cytosolic (TIM) ... 133 3e-30
ref|NP_191104.1| cytosolic triosephosphatisomerase; protein id: ... 129 6e-29
sp|P48495|TPIS_PETHY Triosephosphate isomerase, cytosolic (TIM) ... 128 1e-28
sp|P34937|TPIS_HORVU TRIOSEPHOSPHATE ISOMERASE, CYTOSOLIC (TIM) ... 127 2e-28
sp|P48493|TPIS_LACSA Triosephosphate isomerase, cytosolic (TIM) ... 127 2e-28
>sp|P21820|TPIS_COPJA Triosephosphate isomerase, cytosolic (TIM) gi|99499|pir||A32187
triose-phosphate isomerase (EC 5.3.1.1) - Coptis
japonica gi|556171|gb|AAB62730.1| triosephosphate
isomerase [Coptis japonica]
Length = 253
Score = 133 bits (334), Expect = 3e-30
Identities = 64/79 (81%), Positives = 73/79 (92%)
Frame = -3
Query: 745 GKVATPAQAQEVHADLRKWIHDNVSAEVASTVRIIYGGSVNGANSKELAGQADVDGFLVG 566
GKVA+PAQAQEVH +LRKWI +NV A+VA +VRIIYGGSVNGANSKELAGQ D+DGFLVG
Sbjct: 174 GKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVG 233
Query: 565 GASLKPEFIDIINAATVKN 509
GASLKPEF+DII +ATVK+
Sbjct: 234 GASLKPEFVDIIKSATVKS 252
>ref|NP_191104.1| cytosolic triosephosphatisomerase; protein id: At3g55440.1,
supported by cDNA: 28516., supported by cDNA:
gi_14030670, supported by cDNA: gi_18491102, supported
by cDNA: gi_414549 [Arabidopsis thaliana]
gi|13432260|sp|P48491|TPIS_ARATH Triosephosphate
isomerase, cytosolic (TIM) gi|11270461|pir||T47683
cytosolic triosephosphatisomerase - Arabidopsis thaliana
gi|7076787|emb|CAB75902.1| cytosolic
triosephosphatisomerase [Arabidopsis thaliana]
gi|14030671|gb|AAK53010.1|AF375426_1
AT3g55440/T22E16_100 [Arabidopsis thaliana]
gi|18491103|gb|AAL69518.1| AT3g55440/T22E16_100
[Arabidopsis thaliana]
Length = 254
Score = 129 bits (323), Expect = 6e-29
Identities = 64/78 (82%), Positives = 69/78 (88%)
Frame = -3
Query: 745 GKVATPAQAQEVHADLRKWIHDNVSAEVASTVRIIYGGSVNGANSKELAGQADVDGFLVG 566
GKVA+PAQAQEVH +LRKW+ NVSA+VA+T RIIYGGSVNG N KEL GQADVDGFLVG
Sbjct: 174 GKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVG 233
Query: 565 GASLKPEFIDIINAATVK 512
GASLKPEFIDII AA VK
Sbjct: 234 GASLKPEFIDIIKAAEVK 251
>sp|P48495|TPIS_PETHY Triosephosphate isomerase, cytosolic (TIM)
gi|602590|emb|CAA58230.1| triosephosphate isomerase
[Petunia x hybrida]
Length = 254
Score = 128 bits (321), Expect = 1e-28
Identities = 64/78 (82%), Positives = 69/78 (88%)
Frame = -3
Query: 745 GKVATPAQAQEVHADLRKWIHDNVSAEVASTVRIIYGGSVNGANSKELAGQADVDGFLVG 566
GKVA+PAQAQEVHA+LRKW+ NVS EVA++ RIIYGGSVNGAN KEL GQ DVDGFLVG
Sbjct: 174 GKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVG 233
Query: 565 GASLKPEFIDIINAATVK 512
GASLKPEFIDII AA VK
Sbjct: 234 GASLKPEFIDIIKAAEVK 251
>sp|P34937|TPIS_HORVU TRIOSEPHOSPHATE ISOMERASE, CYTOSOLIC (TIM)
gi|1785948|gb|AAB41052.1| cytosolic triosephosphate
isomerase [Hordeum vulgare]
Length = 253
Score = 127 bits (319), Expect = 2e-28
Identities = 64/79 (81%), Positives = 69/79 (87%)
Frame = -3
Query: 745 GKVATPAQAQEVHADLRKWIHDNVSAEVASTVRIIYGGSVNGANSKELAGQADVDGFLVG 566
GKVATPAQAQEVHA+LR W+ NVS EVA + RIIYGGSV GA+ KELA QADVDGFLVG
Sbjct: 174 GKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVG 233
Query: 565 GASLKPEFIDIINAATVKN 509
GASLKPEFIDIINAA VK+
Sbjct: 234 GASLKPEFIDIINAAAVKS 252
>sp|P48493|TPIS_LACSA Triosephosphate isomerase, cytosolic (TIM) gi|256120|gb|AAB23371.1|
triose phosphate isomerase; TPI [Lactuca sativa]
Length = 195
Score = 127 bits (318), Expect = 2e-28
Identities = 63/78 (80%), Positives = 69/78 (87%)
Frame = -3
Query: 745 GKVATPAQAQEVHADLRKWIHDNVSAEVASTVRIIYGGSVNGANSKELAGQADVDGFLVG 566
GKVA+PAQAQEVHA LRKW DNVSAEV+++ RIIYGGSV+G+N KEL GQ DVDGFLVG
Sbjct: 115 GKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVG 174
Query: 565 GASLKPEFIDIINAATVK 512
GASLKPEFIDII AA VK
Sbjct: 175 GASLKPEFIDIIKAAEVK 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 631,207,742
Number of Sequences: 1393205
Number of extensions: 13160784
Number of successful extensions: 35097
Number of sequences better than 10.0: 324
Number of HSP's better than 10.0 without gapping: 33234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35000
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
