Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007552A_C01 KMC007552A_c01
(424 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568367.1| sugar transporter - like protein; protein id: A... 33 8e-04
gb|AAM64736.1| sugar transporter-like protein [Arabidopsis thali... 33 8e-04
ref|NP_704197.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.22
dbj|BAB71214.1| unnamed protein product [Homo sapiens] 32 1.4
dbj|BAB39322.1| hypothetical protein [Macaca fascicularis] 32 1.4
>ref|NP_568367.1| sugar transporter - like protein; protein id: At5g18840.1,
supported by cDNA: 3250., supported by cDNA: gi_17381264
[Arabidopsis thaliana] gi|17381265|gb|AAL36051.1|
AT5g18840/F17K4_90 [Arabidopsis thaliana]
gi|23309019|gb|AAN18269.1| At5g18840/F17K4_90
[Arabidopsis thaliana]
Length = 482
Score = 33.5 bits (75), Expect(2) = 8e-04
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = -1
Query: 166 YITAFSIGLGTVPWMLMS 113
Y+ AFSIG+G VPW++MS
Sbjct: 386 YVAAFSIGMGPVPWVIMS 403
Score = 28.9 bits (63), Expect(2) = 8e-04
Identities = 11/16 (68%), Positives = 14/16 (86%)
Frame = -2
Query: 324 LLLEWVPTLEIAGVLV 277
LLLEWVP+L + GVL+
Sbjct: 370 LLLEWVPSLAVGGVLI 385
>gb|AAM64736.1| sugar transporter-like protein [Arabidopsis thaliana]
Length = 482
Score = 33.5 bits (75), Expect(2) = 8e-04
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = -1
Query: 166 YITAFSIGLGTVPWMLMS 113
Y+ AFSIG+G VPW++MS
Sbjct: 386 YVAAFSIGMGPVPWVIMS 403
Score = 28.9 bits (63), Expect(2) = 8e-04
Identities = 11/16 (68%), Positives = 14/16 (86%)
Frame = -2
Query: 324 LLLEWVPTLEIAGVLV 277
LLLEWVP+L + GVL+
Sbjct: 370 LLLEWVPSLAVGGVLI 385
>ref|NP_704197.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498935|emb|CAD51013.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1162
Score = 35.0 bits (79), Expect = 0.22
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = +1
Query: 109 LKTLTSKEQSPTQ*KMLL---YIMITRMKKIKEFQVKLEFKDCIVKLSTIK 252
+K L + +Q+ TQ +LL I+IT + K+K+ +K E+KDCI + IK
Sbjct: 196 IKKLDTGKQNVTQTIILLKRIVILITAISKLKKKAIKREYKDCIYLIHVIK 246
>dbj|BAB71214.1| unnamed protein product [Homo sapiens]
Length = 248
Score = 32.3 bits (72), Expect = 1.4
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -1
Query: 217 IPA*LEIL*FFSFL*S*YITAFSIGLGTVPWMLMS 113
+PA L+ L S L Y+ AFSIGLG +PW+++S
Sbjct: 87 VPAFLKWLSLASLLV--YVAAFSIGLGPMPWLVLS 119
>dbj|BAB39322.1| hypothetical protein [Macaca fascicularis]
Length = 621
Score = 32.3 bits (72), Expect = 1.4
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -1
Query: 217 IPA*LEIL*FFSFL*S*YITAFSIGLGTVPWMLMS 113
+PA L+ L S L Y+ AFSIGLG +PW+++S
Sbjct: 460 VPAFLKWLSLASLLV--YVAAFSIGLGPMPWLVLS 492
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 323,865,537
Number of Sequences: 1393205
Number of extensions: 6159100
Number of successful extensions: 13954
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13952
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
