Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007550A_C01 KMC007550A_c01
(759 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189940.1| putative protein; protein id: At3g43540.1, supp... 213 2e-54
ref|ZP_00071353.1| hypothetical protein [Trichodesmium erythraeu... 74 2e-12
ref|NP_683265.1| ORF_ID:tll2476~hypothetical protein [Thermosyne... 69 6e-11
ref|NP_485128.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 68 2e-10
gb|ZP_00111626.1| hypothetical protein [Nostoc punctiforme] 64 2e-09
>ref|NP_189940.1| putative protein; protein id: At3g43540.1, supported by cDNA:
gi_14532795, supported by cDNA: gi_19310740 [Arabidopsis
thaliana] gi|11358080|pir||T47396 hypothetical protein
T18D12.110 - Arabidopsis thaliana
gi|7288032|emb|CAB81794.1| putative protein [Arabidopsis
thaliana] gi|14532796|gb|AAK64179.1| unknown protein
[Arabidopsis thaliana] gi|19310741|gb|AAL85101.1|
unknown protein [Arabidopsis thaliana]
Length = 373
Score = 213 bits (543), Expect = 2e-54
Identities = 97/131 (74%), Positives = 118/131 (90%)
Frame = -3
Query: 757 TKFVDQLPSVMNEITQGVSEFKPTPSENRDCFKCSYNVENTLLVKFNSDAIDETDILEET 578
TK VDQLPSV E+ QGVSEF+P+P ENR+CFKCSY+V +TLLV+FNSDAIDETD+LEET
Sbjct: 243 TKLVDQLPSVFGEVGQGVSEFRPSPLENRNCFKCSYSVPHTLLVQFNSDAIDETDLLEET 302
Query: 577 LKPRVESFGGTLEKVLLNGNHITACIQEPRWQVGKLYTPADAVAQVLKSLSLSDTRILAR 398
L+PR+ES GGTLEKV LNGNH+T CIQ+P+WQ+G +YTPADAVAQ LK++ LS+TR+L+R
Sbjct: 303 LRPRIESIGGTLEKVRLNGNHLTPCIQDPKWQIGTVYTPADAVAQALKTIPLSETRVLSR 362
Query: 397 TISDWFRRFED 365
TI DWFRRFE+
Sbjct: 363 TIVDWFRRFEN 373
>ref|ZP_00071353.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 256
Score = 74.3 bits (181), Expect = 2e-12
Identities = 46/122 (37%), Positives = 65/122 (52%)
Frame = -3
Query: 748 VDQLPSVMNEITQGVSEFKPTPSENRDCFKCSYNVENTLLVKFNSDAIDETDILEETLKP 569
V+Q+ SV+ EF P+P + Y + LL+KFN+D ID+T L + L+
Sbjct: 136 VEQISSVVKV------EFTPSPKITNSIIQKRYQIRRNLLIKFNNDNIDQTLRLSDILRL 189
Query: 568 RVESFGGTLEKVLLNGNHITACIQEPRWQVGKLYTPADAVAQVLKSLSLSDTRILARTIS 389
R S T+++ LNGNH+T Q+ W VG++YTP DA+ Q LK D L R I
Sbjct: 190 RFPSMV-TVQR--LNGNHLTPLGQDLSWSVGQVYTPVDAIGQWLKQEIYKDFNKLQREIL 246
Query: 388 DW 383
W
Sbjct: 247 LW 248
>ref|NP_683265.1| ORF_ID:tll2476~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22296203|dbj|BAC10027.1|
ORF_ID:tll2476~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 258
Score = 69.3 bits (168), Expect = 6e-11
Identities = 36/115 (31%), Positives = 59/115 (51%)
Frame = -3
Query: 727 MNEITQGVSEFKPTPSENRDCFKCSYNVENTLLVKFNSDAIDETDILEETLKPRVESFGG 548
M+ + EF P+P+E + Y V LL++F D ID+T L L+ + FG
Sbjct: 135 MDNLGPASVEFTPSPTETEHFIQKRYPVRRNLLIRFQDDDIDQTARLRSLLRAK---FGD 191
Query: 547 TLEKVLLNGNHITACIQEPRWQVGKLYTPADAVAQVLKSLSLSDTRILARTISDW 383
+ + L GNH+T Q+ +WQVG ++P DA+ Q +K + +L + +W
Sbjct: 192 MVTALKLPGNHLTPLSQDLKWQVGAEFSPLDALGQWIKQSLFPEMPVLEACLLEW 246
>ref|NP_485128.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25341276|pir||AB1942
hypothetical protein alr1085 [imported] - Nostoc sp.
(strain PCC 7120) gi|17130431|dbj|BAB73042.1|
ORF_ID:alr1085~hypothetical protein [Nostoc sp. PCC
7120]
Length = 255
Score = 67.8 bits (164), Expect = 2e-10
Identities = 42/121 (34%), Positives = 58/121 (47%)
Frame = -3
Query: 745 DQLPSVMNEITQGVSEFKPTPSENRDCFKCSYNVENTLLVKFNSDAIDETDILEETLKPR 566
D +P V T EF P+P E + SYNV LL+KFN+D +D++ L + L+ R
Sbjct: 131 DAIPLVEQFNTTLAIEFTPSPLETNKLVQESYNVRRNLLIKFNNDNLDQSAALTKILQVR 190
Query: 565 VESFGGTLEKVLLNGNHITACIQEPRWQVGKLYTPADAVAQVLKSLSLSDTRILARTISD 386
F + L G H T Q+ +WQ G +TP DA+ Q K D L R +
Sbjct: 191 ---FPEMVTAQTLPGTHTTPLGQDVKWQTGSSFTPFDALGQWFKQEVYRDLNQLNRAMLL 247
Query: 385 W 383
W
Sbjct: 248 W 248
>gb|ZP_00111626.1| hypothetical protein [Nostoc punctiforme]
Length = 255
Score = 63.9 bits (154), Expect = 2e-09
Identities = 36/106 (33%), Positives = 53/106 (49%)
Frame = -3
Query: 700 EFKPTPSENRDCFKCSYNVENTLLVKFNSDAIDETDILEETLKPRVESFGGTLEKVLLNG 521
EF P+P E + YN+ LL+KF++D ID++ L + L+ E F + L G
Sbjct: 146 EFTPSPLETNKLVQERYNIRRNLLIKFSNDTIDQSAALTKILQ---ERFDDMVTAQTLPG 202
Query: 520 NHITACIQEPRWQVGKLYTPADAVAQVLKSLSLSDTRILARTISDW 383
H T Q+ +WQ G +TP DA+ Q K + D L +I W
Sbjct: 203 THTTPLGQDIKWQTGTSFTPFDALGQWFKQEAYRDLNQLKSSILLW 248
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,489,716
Number of Sequences: 1393205
Number of extensions: 11805309
Number of successful extensions: 28689
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 27890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28683
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
