Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007540A_C01 KMC007540A_c01
(460 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P48513|TF2B_SOYBN Transcription initiation factor IIB (Genera... 91 7e-18
emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana] 83 2e-15
ref|NP_187644.1| transcription initiation factor IIB (TFIIB); pr... 83 2e-15
ref|NP_181694.1| transcription factor IIB (TFIIB); protein id: A... 80 1e-14
sp|Q8W0W3|TF2B_ORYSA Transcription initiation factor IIB (Genera... 79 3e-14
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB (General transcription factor
TFIIB) gi|7443551|pir||T06440 probable transcription
initiation factor TFIIB - soybean
gi|945087|gb|AAB09756.1| transcription factor TFIIB
[Glycine max]
Length = 313
Score = 90.5 bits (223), Expect = 7e-18
Identities = 41/42 (97%), Positives = 42/42 (99%)
Frame = -1
Query: 460 SVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 335
S+ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP
Sbjct: 272 SLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313
>emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana]
Length = 301
Score = 82.8 bits (203), Expect = 2e-15
Identities = 39/42 (92%), Positives = 40/42 (94%)
Frame = -1
Query: 460 SVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 335
SVATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP
Sbjct: 260 SVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 301
>ref|NP_187644.1| transcription initiation factor IIB (TFIIB); protein id:
At3g10330.1, supported by cDNA: 38950., supported by
cDNA: gi_15215783, supported by cDNA: gi_16974426
[Arabidopsis thaliana] gi|21363045|sp|Q9SS44|TFB2_ARATH
Transcription initiation factor IIB-2 (General
transcription factor TFIIB-2) (AtTFIIB2)
gi|6056193|gb|AAF02810.1|AC009400_6 transcription
initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|15215784|gb|AAK91437.1| AT3g10330/F14P13_7
[Arabidopsis thaliana] gi|16974427|gb|AAL31139.1|
AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|21593436|gb|AAM65403.1| transcription initiation
factor IIB (TFIIB) [Arabidopsis thaliana]
Length = 312
Score = 82.8 bits (203), Expect = 2e-15
Identities = 39/42 (92%), Positives = 40/42 (94%)
Frame = -1
Query: 460 SVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 335
SVATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP
Sbjct: 271 SVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312
>ref|NP_181694.1| transcription factor IIB (TFIIB); protein id: At2g41630.1,
supported by cDNA: 2657., supported by cDNA:
gi_20260321, supported by cDNA: gi_945084 [Arabidopsis
thaliana] gi|1351221|sp|P48512|TFB1_ARATH Transcription
initiation factor IIB-1 (General transcription factor
TFIIB-1) (AtTFIIB1) gi|7443550|pir||T00819 transcription
initiation factor IIB - Arabidopsis thaliana
gi|945085|gb|AAB09755.1| transcription factor TFIIB
[Arabidopsis thaliana] gi|2618697|gb|AAB84344.1|
transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|20260322|gb|AAM13059.1| transcription factor IIB
[Arabidopsis thaliana] gi|21554842|gb|AAM63705.1|
transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|22136182|gb|AAM91169.1| transcription factor IIB
[Arabidopsis thaliana]
Length = 312
Score = 80.1 bits (196), Expect = 1e-14
Identities = 37/42 (88%), Positives = 39/42 (92%)
Frame = -1
Query: 460 SVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 335
S ATGVAEGTIRNSYKDLYPH+SKI P+WYAKEEDLKNL SP
Sbjct: 271 SHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312
>sp|Q8W0W3|TF2B_ORYSA Transcription initiation factor IIB (General transcription factor
TFIIB) gi|18481632|gb|AAL73491.1|AF464908_1 general
transcription factor TFIIB [Oryza sativa]
Length = 312
Score = 78.6 bits (192), Expect = 3e-14
Identities = 35/42 (83%), Positives = 40/42 (94%)
Frame = -1
Query: 460 SVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 335
S+ATGVAEGTIRNSYKDLYP+ S++IPN YAKEEDLKNLC+P
Sbjct: 271 SLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLCTP 312
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 362,261,577
Number of Sequences: 1393205
Number of extensions: 6866913
Number of successful extensions: 14335
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14332
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
