Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007524A_C02 KMC007524A_c02
(728 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182078.1| unknown protein; protein id: At2g45540.1 [Arabi... 115 8e-25
gb|AAN38986.1| LvsC [Dictyostelium discoideum] 80 4e-14
dbj|BAA25466.3| KIAA0540 protein [Homo sapiens] 79 7e-14
sp|P25356|BPH1_YEAST Beige protein homolog 1 gi|83220|pir||S1944... 77 2e-13
ref|NP_009961.2| beige protein homologue 1; Bph1p [Saccharomyces... 77 2e-13
>ref|NP_182078.1| unknown protein; protein id: At2g45540.1 [Arabidopsis thaliana]
gi|7485640|pir||T00867 hypothetical protein At2g45540
[imported] - Arabidopsis thaliana
gi|2979554|gb|AAC06163.1| unknown protein [Arabidopsis
thaliana]
Length = 2946
Score = 115 bits (287), Expect = 8e-25
Identities = 55/69 (79%), Positives = 59/69 (84%)
Frame = -1
Query: 545 VRELFYLPEVLTHENSIDFGTTHLGGKLDIVRLLAWAENPVDFVHTHRMVLESEYVSAHL 366
V ELFYLPEVLT+ENSIDFGTT LG KLD V+L WA+NPVDFVH R LESE+VSAHL
Sbjct: 2381 VPELFYLPEVLTNENSIDFGTTQLGEKLDAVKLPPWAKNPVDFVHKQRRALESEHVSAHL 2440
Query: 365 HEWIDLIFG 339
HEWIDLIFG
Sbjct: 2441 HEWIDLIFG 2449
>gb|AAN38986.1| LvsC [Dictyostelium discoideum]
Length = 2402
Score = 79.7 bits (195), Expect = 4e-14
Identities = 36/69 (52%), Positives = 48/69 (69%)
Frame = -1
Query: 545 VRELFYLPEVLTHENSIDFGTTHLGGKLDIVRLLAWAENPVDFVHTHRMVLESEYVSAHL 366
+ E +Y+PE LT+ N I+FG G ++ V L WA +P DF+ +R LES+YVS+HL
Sbjct: 2008 IPEFYYMPEFLTNHNHINFGIKQNGIGIEDVLLPPWASSPSDFIRINREALESDYVSSHL 2067
Query: 365 HEWIDLIFG 339
HEWIDLIFG
Sbjct: 2068 HEWIDLIFG 2076
>dbj|BAA25466.3| KIAA0540 protein [Homo sapiens]
Length = 2041
Score = 79.0 bits (193), Expect = 7e-14
Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Frame = -1
Query: 545 VRELFYLPEVLTHENSIDFGTTHLGG-KLDIVRLLAWAENPVDFVHTHRMVLESEYVSAH 369
+ E FY P+ L ++N D G L K+ V L WA +P DF+ HR LESEYVSAH
Sbjct: 1503 IPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWASSPEDFIQQHRQALESEYVSAH 1562
Query: 368 LHEWIDLIFG 339
LHEWIDLIFG
Sbjct: 1563 LHEWIDLIFG 1572
>sp|P25356|BPH1_YEAST Beige protein homolog 1 gi|83220|pir||S19444 hypothetical protein
YCR032w - yeast (Saccharomyces cerevisiae)
Length = 2167
Score = 77.4 bits (189), Expect = 2e-13
Identities = 40/68 (58%), Positives = 46/68 (66%), Gaps = 1/68 (1%)
Frame = -1
Query: 539 ELFYLPEVLTHENSIDFGTTHLGGKLDIVRLLAWAE-NPVDFVHTHRMVLESEYVSAHLH 363
E F+LPE L + NS DFGT G K+D V L WA +P F+ +R LES YVSAHLH
Sbjct: 1712 EFFFLPEFLINVNSYDFGTDQSGKKVDDVVLPPWANGDPKVFIQKNREALESPYVSAHLH 1771
Query: 362 EWIDLIFG 339
EWIDLIFG
Sbjct: 1772 EWIDLIFG 1779
>ref|NP_009961.2| beige protein homologue 1; Bph1p [Saccharomyces cerevisiae]
gi|4809|emb|CAA44309.1| YCR601 [Saccharomyces cerevisiae]
gi|14588943|emb|CAC42982.1| hypothetical protein
[Saccharomyces cerevisiae]
Length = 2167
Score = 77.4 bits (189), Expect = 2e-13
Identities = 40/68 (58%), Positives = 46/68 (66%), Gaps = 1/68 (1%)
Frame = -1
Query: 539 ELFYLPEVLTHENSIDFGTTHLGGKLDIVRLLAWAE-NPVDFVHTHRMVLESEYVSAHLH 363
E F+LPE L + NS DFGT G K+D V L WA +P F+ +R LES YVSAHLH
Sbjct: 1712 EFFFLPEFLINVNSYDFGTDQSGKKVDDVVLPPWANGDPKVFIQKNREALESPYVSAHLH 1771
Query: 362 EWIDLIFG 339
EWIDLIFG
Sbjct: 1772 EWIDLIFG 1779
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,146,619
Number of Sequences: 1393205
Number of extensions: 11599117
Number of successful extensions: 26020
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 25242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25970
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
