Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007521A_C01 KMC007521A_c01
(378 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB85608.1| kinetochore protein [Brassica juncea] 45 2e-04
dbj|BAB85605.1| kinetochore protein [Brassica juncea] 45 2e-04
dbj|BAB85606.1| kinetochore protein [Brassica juncea] 45 2e-04
ref|NP_565123.1| E3 ubiquitin ligase SCF complex subunit, SKP1/A... 45 3e-04
dbj|BAB85607.1| kinetochore protein [Brassica juncea] 45 3e-04
>dbj|BAB85608.1| kinetochore protein [Brassica juncea]
Length = 160
Score = 45.4 bits (106), Expect = 2e-04
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -3
Query: 376 SSFVKDNQSIFSQLHDAASFLNIPNLMELTSRTMRDMKKGSTTEEISDRYSTLSIARILS 197
+ F+K +Q+ +L AA++LNI NL++LT +T+ DM KG T EEI +T +I S
Sbjct: 88 AEFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIR---TTFNIKNDFS 144
Query: 196 P 194
P
Sbjct: 145 P 145
>dbj|BAB85605.1| kinetochore protein [Brassica juncea]
Length = 160
Score = 45.4 bits (106), Expect = 2e-04
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -3
Query: 376 SSFVKDNQSIFSQLHDAASFLNIPNLMELTSRTMRDMKKGSTTEEISDRYSTLSIARILS 197
+ F+K +Q+ +L AA++LNI NL++LT +T+ DM KG T EEI +T +I S
Sbjct: 88 AEFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIR---TTFNIKNDFS 144
Query: 196 P 194
P
Sbjct: 145 P 145
>dbj|BAB85606.1| kinetochore protein [Brassica juncea]
Length = 161
Score = 45.4 bits (106), Expect = 2e-04
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -3
Query: 376 SSFVKDNQSIFSQLHDAASFLNIPNLMELTSRTMRDMKKGSTTEEISDRYSTLSIARILS 197
+ F+K +Q+ +L AA++LNI NL++LT +T+ DM KG T EEI +T +I S
Sbjct: 89 TEFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIR---TTFNIKNDFS 145
Query: 196 P 194
P
Sbjct: 146 P 146
>ref|NP_565123.1| E3 ubiquitin ligase SCF complex subunit, SKP1/ASK1 (At1); protein
id: At1g75950.1, supported by cDNA: gi_1432082,
supported by cDNA: gi_19424109, supported by cDNA:
gi_21281126, supported by cDNA: gi_3068806, supported by
cDNA: gi_3719208 [Arabidopsis thaliana]
gi|11291720|pir||T51309 Skp1 homolog [imported] -
Arabidopsis thaliana gi|1432083|gb|AAB17535.1| homolog
to Skp1p, an evolutionarily conserved kinetochore
protein in budding yeast [Arabidopsis thaliana]
gi|3068807|gb|AAC14444.1| Skp1 homolog [Arabidopsis
thaliana] gi|3719209|gb|AAC63109.1| UIP1 [Arabidopsis
thaliana] gi|6721107|gb|AAF26761.1|AC007396_10 T4O12.17
[Arabidopsis thaliana] gi|19424110|gb|AAL87354.1|
putative SKP1/ASK1 protein At1 [Arabidopsis thaliana]
gi|21281127|gb|AAM45019.1| putative SKP1/ASK1 protein
At1 [Arabidopsis thaliana]
Length = 160
Score = 44.7 bits (104), Expect = 3e-04
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = -3
Query: 376 SSFVKDNQSIFSQLHDAASFLNIPNLMELTSRTMRDMKKGSTTEEISDRYS 224
+ F+K +Q+ +L AA++LNI NL++LT +T+ DM KG T EEI ++
Sbjct: 88 ADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFN 138
>dbj|BAB85607.1| kinetochore protein [Brassica juncea]
Length = 160
Score = 44.7 bits (104), Expect = 3e-04
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = -3
Query: 376 SSFVKDNQSIFSQLHDAASFLNIPNLMELTSRTMRDMKKGSTTEEISDRYS 224
+ F+K +Q+ +L AA++LNI NL++LT +T+ DM KG T EEI ++
Sbjct: 88 AEFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFN 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,503,926
Number of Sequences: 1393205
Number of extensions: 6353925
Number of successful extensions: 37308
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 33471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36902
length of database: 448,689,247
effective HSP length: 101
effective length of database: 307,975,542
effective search space used: 7391413008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
