Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007520A_C01 KMC007520A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL48317.1| succinoaminoimidazolecarboximide ribonucleotide s... 58 7e-08
gb|AAL85973.1| putative phosphoribosyamidoimidazole-succinocarbo... 48 7e-05
gb|AAA16231.1| SAICAR synthetase 48 7e-05
ref|NP_188748.1| phosphoribosyamidoimidazole-succinocarboxamide ... 48 7e-05
ref|NP_488350.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 35 0.61
>gb|AAL48317.1| succinoaminoimidazolecarboximide ribonucleotide synthetase [Vigna
unguiculata]
Length = 402
Score = 58.2 bits (139), Expect = 7e-08
Identities = 29/34 (85%), Positives = 31/34 (90%)
Frame = -3
Query: 552 YETITKSKFEVLLTEEPIHERISRNVAYALSSLK 451
YETIT SKFE+ LTEEPIH+RISRNVA ALSSLK
Sbjct: 369 YETITNSKFEMPLTEEPIHDRISRNVASALSSLK 402
>gb|AAL85973.1| putative phosphoribosyamidoimidazole-succinocarboxamide synthase
[Arabidopsis thaliana]
Length = 374
Score = 48.1 bits (113), Expect = 7e-05
Identities = 21/34 (61%), Positives = 29/34 (84%)
Frame = -3
Query: 552 YETITKSKFEVLLTEEPIHERISRNVAYALSSLK 451
YETIT S+ +++ T+EPIH+RISRN + ALSSL+
Sbjct: 339 YETITGSRIDIIPTQEPIHDRISRNTSQALSSLR 372
>gb|AAA16231.1| SAICAR synthetase
Length = 411
Score = 48.1 bits (113), Expect = 7e-05
Identities = 21/34 (61%), Positives = 29/34 (84%)
Frame = -3
Query: 552 YETITKSKFEVLLTEEPIHERISRNVAYALSSLK 451
YETIT S+ +++ T+EPIH+RISRN + ALSSL+
Sbjct: 376 YETITGSRIDIIPTQEPIHDRISRNTSQALSSLR 409
>ref|NP_188748.1| phosphoribosyamidoimidazole-succinocarboxamide synthase, putative;
protein id: At3g21110.1, supported by cDNA: 35508.
[Arabidopsis thaliana] gi|26454658|sp|P38025|PUR7_ARATH
Phosphoribosylamidoimidazole-succinocarboxamide
synthase, chloroplast precursor (SAICAR synthetase)
gi|11994271|dbj|BAB01454.1|
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-ami
noimidazole synthetase [Arabidopsis thaliana]
gi|27754219|gb|AAO22563.1| putative
phosphoribosyamidoimidazole-succinocarboxamide synthase
[Arabidopsis thaliana]
Length = 411
Score = 48.1 bits (113), Expect = 7e-05
Identities = 21/34 (61%), Positives = 29/34 (84%)
Frame = -3
Query: 552 YETITKSKFEVLLTEEPIHERISRNVAYALSSLK 451
YETIT S+ +++ T+EPIH+RISRN + ALSSL+
Sbjct: 376 YETITGSRIDIIPTQEPIHDRISRNTSQALSSLR 409
>ref|NP_488350.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25337993|pir||AG2344
hypothetical protein alr4310 [imported] - Nostoc sp.
(strain PCC 7120) gi|17133446|dbj|BAB76009.1|
ORF_ID:alr4310~hypothetical protein [Nostoc sp. PCC
7120]
Length = 184
Score = 35.0 bits (79), Expect = 0.61
Identities = 14/38 (36%), Positives = 25/38 (64%), Gaps = 2/38 (5%)
Frame = +3
Query: 30 LQSVLTHKKLI--KNVQATFPIWLPVFFLAGWLINPKQ 137
L +VLT + ++ + +Q T+P+W+P FF GW + K+
Sbjct: 61 LYAVLTERVVVDDQGIQVTYPVWVPKFFRKGWSLPWKE 98
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,434,319
Number of Sequences: 1393205
Number of extensions: 8475956
Number of successful extensions: 17276
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17272
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
