Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007518A_C01 KMC007518A_c01
(340 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176052.2| clathrin-associated protein, putative; protein ... 80 9e-15
pir||F96607 probable clathrin-associated adaptor protein F25P12.... 80 9e-15
sp|P47795|A47H_DISOM CLATHRIN COAT ASSEMBLY PROTEIN AP47 HOMOLOG... 46 1e-04
ref|NP_083781.1| adaptor-related protein complex 3, mu 2 subunit... 45 2e-04
gb|AAH27301.1| adaptor-related protein complex 3, mu 2 subunit [... 45 2e-04
>ref|NP_176052.2| clathrin-associated protein, putative; protein id: At1g56590.1,
supported by cDNA: gi_20466507 [Arabidopsis thaliana]
gi|20466508|gb|AAM20571.1| clathrin-associated protein,
putative [Arabidopsis thaliana]
gi|23198150|gb|AAN15602.1| clathrin-associated protein,
putative [Arabidopsis thaliana]
Length = 299
Score = 79.7 bits (195), Expect = 9e-15
Identities = 36/49 (73%), Positives = 44/49 (89%)
Frame = -2
Query: 339 HVFPTFQVDFRIMGVALSGLQIDKLDLQTVPYRFYKGFRALTRAGPFEV 193
HVFPTF++ F+IMG+ALSGL+I+KLDLQT+P R YKGFRA TRAG F+V
Sbjct: 249 HVFPTFKLGFKIMGIALSGLRIEKLDLQTIPPRLYKGFRAQTRAGEFDV 297
>pir||F96607 probable clathrin-associated adaptor protein F25P12.96 [imported] -
Arabidopsis thaliana
gi|9954753|gb|AAG09104.1|AC009323_15 Putative
clathrin-associated adaptor protein [Arabidopsis
thaliana]
Length = 417
Score = 79.7 bits (195), Expect = 9e-15
Identities = 36/49 (73%), Positives = 44/49 (89%)
Frame = -2
Query: 339 HVFPTFQVDFRIMGVALSGLQIDKLDLQTVPYRFYKGFRALTRAGPFEV 193
HVFPTF++ F+IMG+ALSGL+I+KLDLQT+P R YKGFRA TRAG F+V
Sbjct: 367 HVFPTFKLGFKIMGIALSGLRIEKLDLQTIPPRLYKGFRAQTRAGEFDV 415
>sp|P47795|A47H_DISOM CLATHRIN COAT ASSEMBLY PROTEIN AP47 HOMOLOG (CLATHRIN COAT
ASSOCIATED PROTEIN AP47 HOMOLOG) (GOLGI ADAPTOR AP-1 47
KD PROTEIN HOMOLOG) (HA1 47 KD SUBUNIT HOMOLOG)
(CLATHRIN ASSEMBLY PROTEIN ASSEMBLY PROTEIN COMPLEX 1
MEDIUM CHAIN HOMOLOG) gi|2133801|pir||I50530
clathrin-associated adaptor protein p47 - electric ray
(Discopyge ommata) gi|468275|gb|AAA57230.1|
clathrin-associated adaptor protein
Length = 418
Score = 45.8 bits (107), Expect = 1e-04
Identities = 19/46 (41%), Positives = 33/46 (71%)
Frame = -2
Query: 330 PTFQVDFRIMGVALSGLQIDKLDLQTVPYRFYKGFRALTRAGPFEV 193
PT + FRI +A+SGL++++LD+ Y+ +KG + +T+AG F+V
Sbjct: 371 PTLNIQFRIQQLAVSGLKVNRLDMYGERYKPFKGVKYVTKAGKFQV 416
>ref|NP_083781.1| adaptor-related protein complex 3, mu 2 subunit [Mus musculus]
gi|14994229|gb|AAK73278.1| adaptor-related protein
complex AP-3 mu2 subunit [Mus musculus]
Length = 418
Score = 45.4 bits (106), Expect = 2e-04
Identities = 18/46 (39%), Positives = 33/46 (71%)
Frame = -2
Query: 330 PTFQVDFRIMGVALSGLQIDKLDLQTVPYRFYKGFRALTRAGPFEV 193
PT + F+I +A+SGL++++LD+ Y+ +KG + +T+AG F+V
Sbjct: 371 PTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAGKFQV 416
>gb|AAH27301.1| adaptor-related protein complex 3, mu 2 subunit [Mus musculus]
gi|20988548|gb|AAH30484.1| adaptor-related protein
complex 3, mu 2 subunit [Mus musculus]
gi|26346238|dbj|BAC36770.1| unnamed protein product [Mus
musculus] gi|26349059|dbj|BAC38169.1| unnamed protein
product [Mus musculus] gi|26350167|dbj|BAC38723.1|
unnamed protein product [Mus musculus]
Length = 418
Score = 45.4 bits (106), Expect = 2e-04
Identities = 18/46 (39%), Positives = 33/46 (71%)
Frame = -2
Query: 330 PTFQVDFRIMGVALSGLQIDKLDLQTVPYRFYKGFRALTRAGPFEV 193
PT + F+I +A+SGL++++LD+ Y+ +KG + +T+AG F+V
Sbjct: 371 PTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAGKFQV 416
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 325,155,761
Number of Sequences: 1393205
Number of extensions: 6627791
Number of successful extensions: 15140
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 14756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15130
length of database: 448,689,247
effective HSP length: 88
effective length of database: 326,087,207
effective search space used: 7826092968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
