Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007512A_C01 KMC007512A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191718.1| putative protein; protein id: At3g61590.1, supp... 158 5e-38
dbj|BAB85274.1| P0684E06.20 [Oryza sativa (japonica cultivar-gro... 154 6e-37
gb|AAN87351.1| proliferating floral organs protein [Lotus japoni... 49 3e-05
pir||T50556 stamina pistilloidia protein Stp [imported] - garden... 48 8e-05
ref|NP_197075.1| F-box protein family; protein id: At5g15710.1 [... 43 0.002
>ref|NP_191718.1| putative protein; protein id: At3g61590.1, supported by cDNA:
gi_14423513 [Arabidopsis thaliana]
gi|11357715|pir||T47951 hypothetical protein F2A19.190 -
Arabidopsis thaliana gi|6850850|emb|CAB71089.1| putative
protein [Arabidopsis thaliana]
gi|14423514|gb|AAK62439.1|AF386994_1 putative protein
[Arabidopsis thaliana] gi|23197692|gb|AAN15373.1|
putative protein [Arabidopsis thaliana]
Length = 411
Score = 158 bits (399), Expect = 5e-38
Identities = 68/102 (66%), Positives = 84/102 (81%)
Frame = -3
Query: 573 GKSARHDIIKGVGIWVLNDRKWEEIGRMPLKFFPGFGEFDDVFASSGADDLIFIQSYGAP 394
GK R ++IKG+GIWVL ++W E+ +MP +FF GFGEFD+VFASSG DDL++IQSYG+P
Sbjct: 310 GKHDRPEVIKGIGIWVLKGKEWVEMAKMPQRFFQGFGEFDEVFASSGTDDLVYIQSYGSP 369
Query: 393 TLLIYDMSHNPWKWSPKCPVTKRFSLQFFTGFCFEPRLEIAP 268
LL +DM+ W+WS KCPVTK+F LQ FTGFCFEPRLEIAP
Sbjct: 370 ALLTFDMNLKYWRWSQKCPVTKKFPLQLFTGFCFEPRLEIAP 411
>dbj|BAB85274.1| P0684E06.20 [Oryza sativa (japonica cultivar-group)]
gi|21952888|dbj|BAC06300.1| P0445H04.11 [Oryza sativa
(japonica cultivar-group)]
Length = 406
Score = 154 bits (390), Expect = 6e-37
Identities = 68/99 (68%), Positives = 79/99 (79%)
Frame = -3
Query: 570 KSARHDIIKGVGIWVLNDRKWEEIGRMPLKFFPGFGEFDDVFASSGADDLIFIQSYGAPT 391
K R DIIKG+GIW L+ ++W+E+GRMP K F GFGEFDDVFASSG DDL++IQSYGA
Sbjct: 306 KQNRPDIIKGIGIWELHKKQWQEVGRMPHKLFQGFGEFDDVFASSGTDDLVYIQSYGATA 365
Query: 390 LLIYDMSHNPWKWSPKCPVTKRFSLQFFTGFCFEPRLEI 274
LL +D WKWS KCPV+KRF LQ FTGFCFEPRL+I
Sbjct: 366 LLAFDTKQKQWKWSAKCPVSKRFPLQLFTGFCFEPRLDI 404
>gb|AAN87351.1| proliferating floral organs protein [Lotus japonicus]
Length = 449
Score = 49.3 bits (116), Expect = 3e-05
Identities = 27/101 (26%), Positives = 46/101 (44%), Gaps = 4/101 (3%)
Frame = -3
Query: 570 KSARHDIIKGVGIWVLN--DRKWEEIGRMPLKFFPGFGEFD--DVFASSGADDLIFIQSY 403
+ ++ ++ + + +W L W E RMP + + F E + + F G + + I
Sbjct: 330 EKSKLNVPRSLRVWTLQACGTMWVESERMPQQLYIQFAEIEGGNGFECVGHGEFVVIMIK 389
Query: 402 GAPTLLIYDMSHNPWKWSPKCPVTKRFSLQFFTGFCFEPRL 280
G L+YD+ W+W P CP + GF +EPRL
Sbjct: 390 GTDKALLYDLVRKRWQWIPPCPYAGYDGFELH-GFAYEPRL 429
>pir||T50556 stamina pistilloidia protein Stp [imported] - garden pea
gi|4101570|gb|AAD01204.1| stamina pistilloidia [Pisum
sativum]
Length = 443
Score = 48.1 bits (113), Expect = 8e-05
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Frame = -3
Query: 555 DIIKGVGIWVLND--RKWEEIGRMPLKFFPGFGEFDDV--FASSGADDLIFIQSYGAPTL 388
++ K + +W L W E RMP + + F + ++ F G + I I G+
Sbjct: 331 NVPKNLRVWSLQGCGNVWVETERMPQQLYVQFADMENGNGFECVGNGEFIVIMIKGSDKG 390
Query: 387 LIYDMSHNPWKWSPKCPVTKRFSLQFFTGFCFEPRL 280
L+YD+ W+W P CP + GF ++PRL
Sbjct: 391 LVYDIGRKRWQWIPPCPYAGYDGFELH-GFAYDPRL 425
>ref|NP_197075.1| F-box protein family; protein id: At5g15710.1 [Arabidopsis
thaliana] gi|11357428|pir||T51400 hypothetical protein
F14F8_90 - Arabidopsis thaliana
gi|9755616|emb|CAC01770.1| putative protein [Arabidopsis
thaliana]
Length = 448
Score = 43.1 bits (100), Expect = 0.002
Identities = 29/102 (28%), Positives = 45/102 (43%), Gaps = 3/102 (2%)
Frame = -3
Query: 573 GKSARHDIIKGVGIWVLNDRK--WEEIGRMPLKFFPGFGEFD-DVFASSGADDLIFIQSY 403
G+ + ++ + IW L+ K W EI RMP K+F + F G D+LI S+
Sbjct: 347 GRIGLYSTLQSMRIWELDHTKVSWVEISRMPPKYFRALLRLSAERFECFGQDNLICFTSW 406
Query: 402 GAPTLLIYDMSHNPWKWSPKCPVTKRFSLQFFTGFCFEPRLE 277
L+Y++ W W C + S F +EPR +
Sbjct: 407 NQGKGLLYNVDKKIWSWISGCALQSCNSQVCF----YEPRFD 444
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,039,430
Number of Sequences: 1393205
Number of extensions: 10345307
Number of successful extensions: 26633
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 25708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26604
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
