Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007499A_C01 KMC007499A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_693459.1| hypothetical protein [Oceanobacillus iheyensis ... 32 6.5
ref|XP_140518.2| similar to hypothetical protein FLJ20307 [Homo ... 31 8.5
ref|XP_140519.1| hypothetical protein XP_140519 [Mus musculus] 31 8.5
dbj|BAC27915.1| unnamed protein product [Mus musculus] 31 8.5
>ref|NP_693459.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
gi|22778224|dbj|BAC14494.1| hypothetical protein
[Oceanobacillus iheyensis]
Length = 167
Score = 31.6 bits (70), Expect = 6.5
Identities = 14/36 (38%), Positives = 22/36 (60%)
Frame = +3
Query: 72 NILFLNSIFDSMQPN**GEFIWLNFKVIRILIHAFY 179
++L LN I+D+ P+ +W+N +I I IH FY
Sbjct: 121 SVLELNIIYDANNPDNQMSNLWINILLISIFIHLFY 156
>ref|XP_140518.2| similar to hypothetical protein FLJ20307 [Homo sapiens] [Mus
musculus]
Length = 1628
Score = 31.2 bits (69), Expect = 8.5
Identities = 16/58 (27%), Positives = 29/58 (49%)
Frame = +2
Query: 182 RT*CRACHTSISSSEPHQLG*FTIKILGILSNKRLFFCLVCGASIIKTKIVSARWLGE 355
RT C H + SSS PH+ + +++F C +CG + +++A +LG+
Sbjct: 207 RTCCHCSHRAESSSSPHE------HVRHTHGPQKVFSCDLCGFQCAEENLLNAHYLGK 258
>ref|XP_140519.1| hypothetical protein XP_140519 [Mus musculus]
Length = 317
Score = 31.2 bits (69), Expect = 8.5
Identities = 16/58 (27%), Positives = 29/58 (49%)
Frame = +2
Query: 182 RT*CRACHTSISSSEPHQLG*FTIKILGILSNKRLFFCLVCGASIIKTKIVSARWLGE 355
RT C H + SSS PH+ + +++F C +CG + +++A +LG+
Sbjct: 207 RTCCHCSHRAESSSSPHE------HVRHTHGPQKVFSCDLCGFQCAEENLLNAHYLGK 258
>dbj|BAC27915.1| unnamed protein product [Mus musculus]
Length = 771
Score = 31.2 bits (69), Expect = 8.5
Identities = 16/58 (27%), Positives = 29/58 (49%)
Frame = +2
Query: 182 RT*CRACHTSISSSEPHQLG*FTIKILGILSNKRLFFCLVCGASIIKTKIVSARWLGE 355
RT C H + SSS PH+ + +++F C +CG + +++A +LG+
Sbjct: 207 RTCCHCSHRAESSSSPHE------HVRHTHGPQKVFSCDLCGFQCAEENLLNAHYLGK 258
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,388,606
Number of Sequences: 1393205
Number of extensions: 8576915
Number of successful extensions: 17544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17534
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
