Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007489A_C01 KMC007489A_c01
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL33610.1|AF439974_1 SGT1 [Hordeum vulgare] 214 9e-55
ref|NP_194088.1| phosphatase like protein; protein id: At4g23570... 204 9e-52
gb|AAL33611.1|AF439975_1 SGT1a [Arabidopsis thaliana] 204 9e-52
ref|NP_192865.1| putative protein; protein id: At4g11260.1, supp... 199 3e-50
gb|AAF18438.1|AF192467_1 Sgt1 [Oryza sativa] 197 1e-49
>gb|AAL33610.1|AF439974_1 SGT1 [Hordeum vulgare]
Length = 373
Score = 214 bits (545), Expect = 9e-55
Identities = 113/204 (55%), Positives = 146/204 (71%)
Frame = +1
Query: 67 MAAAAETTTTVKDLEKKAKEAFIDDDFSLAVDLYTEAINLDPINANLFADRAQAHLKLNA 246
MAAAA + DLE KAKEAF+DDDF LA +LYT+AI P A L+ADRAQAH+KL +
Sbjct: 1 MAAAAAS-----DLESKAKEAFVDDDFELAAELYTQAIEAGPATAELYADRAQAHIKLGS 55
Query: 247 FTEAVSDANKAIQLDPSLPKAYLRKGTACIKLEEYHTAKVALEKGASFAPDDSRFTNLIQ 426
+TEAV+DANKAI+LDPS+ KAYLRKG+ACIKLEEY TAK ALE G+S+A DSRFT L++
Sbjct: 56 YTEAVADANKAIELDPSMHKAYLRKGSACIKLEEYQTAKAALEVGSSYASGDSRFTRLMK 115
Query: 427 QCDRYIAEESNALTSTLSTTAPLISVPSGDDPRSAVSDGTNKEAETDSSLSQINEVAPSK 606
+CD IAEE A + + A ++ + + V++ +++ E + EV PSK
Sbjct: 116 ECDDRIAEE--ASQAPVKNAAAAVAPATSSGATTVVTEAEDQDGENMENAQPTVEV-PSK 172
Query: 607 PKYRYEYYQKPEEVVVTIFAKGIP 678
PKYR++YY P EVV+TIFAKG+P
Sbjct: 173 PKYRHDYYNTPTEVVLTIFAKGVP 196
>ref|NP_194088.1| phosphatase like protein; protein id: At4g23570.1, supported by
cDNA: gi_17017307, supported by cDNA: gi_17381043,
supported by cDNA: gi_20465860 [Arabidopsis thaliana]
gi|7486748|pir||T05589 hypothetical protein F9D16.40 -
Arabidopsis thaliana gi|4454026|emb|CAA23023.1|
phosphatase like protein [Arabidopsis thaliana]
gi|7269205|emb|CAB79312.1| phosphatase like protein
[Arabidopsis thaliana] gi|17381044|gb|AAL36334.1|
putative phosphatase [Arabidopsis thaliana]
gi|20465861|gb|AAM20035.1| putative phosphatase
[Arabidopsis thaliana]
Length = 350
Score = 204 bits (519), Expect = 9e-52
Identities = 110/193 (56%), Positives = 136/193 (69%)
Frame = +1
Query: 100 KDLEKKAKEAFIDDDFSLAVDLYTEAINLDPINANLFADRAQAHLKLNAFTEAVSDANKA 279
K+L KAKEAF+DDDF +AVDLY++AI+LDP A FADRAQA++KL +FTEAV+DANKA
Sbjct: 3 KELADKAKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAYIKLESFTEAVADANKA 62
Query: 280 IQLDPSLPKAYLRKGTACIKLEEYHTAKVALEKGASFAPDDSRFTNLIQQCDRYIAEESN 459
I+LDPSL KAYLRKGTAC+KLEEY TAK ALEKGAS P +S+F LI +C+ I EE
Sbjct: 63 IELDPSLTKAYLRKGTACMKLEEYRTAKTALEKGASITPSESKFKKLIDECNFLITEEEK 122
Query: 460 ALTSTLSTTAPLISVPSGDDPRSAVSDGTNKEAETDSSLSQINEVAPSKPKYRYEYYQKP 639
L + +T P + T +S++ +V P+ KYR+EYYQKP
Sbjct: 123 DLVQPVPSTLP--------------------SSVTAPPVSEL-DVTPT-AKYRHEYYQKP 160
Query: 640 EEVVVTIFAKGIP 678
EEVVVT+FAKGIP
Sbjct: 161 EEVVVTVFAKGIP 173
>gb|AAL33611.1|AF439975_1 SGT1a [Arabidopsis thaliana]
Length = 350
Score = 204 bits (519), Expect = 9e-52
Identities = 110/193 (56%), Positives = 136/193 (69%)
Frame = +1
Query: 100 KDLEKKAKEAFIDDDFSLAVDLYTEAINLDPINANLFADRAQAHLKLNAFTEAVSDANKA 279
K+L KAKEAF+DDDF +AVDLY++AI+LDP A FADRAQA++KL +FTEAV+DANKA
Sbjct: 3 KELADKAKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAYIKLESFTEAVADANKA 62
Query: 280 IQLDPSLPKAYLRKGTACIKLEEYHTAKVALEKGASFAPDDSRFTNLIQQCDRYIAEESN 459
I+LDPSL KAYLRKGTAC+KLEEY TAK ALEKGAS P +S+F LI +C+ I EE
Sbjct: 63 IELDPSLTKAYLRKGTACMKLEEYRTAKTALEKGASITPSESKFKKLIDECNFLITEEEK 122
Query: 460 ALTSTLSTTAPLISVPSGDDPRSAVSDGTNKEAETDSSLSQINEVAPSKPKYRYEYYQKP 639
L + +T P + T +S++ +V P+ KYR+EYYQKP
Sbjct: 123 DLVQPVPSTLP--------------------SSVTAPPVSEL-DVTPT-AKYRHEYYQKP 160
Query: 640 EEVVVTIFAKGIP 678
EEVVVT+FAKGIP
Sbjct: 161 EEVVVTVFAKGIP 173
>ref|NP_192865.1| putative protein; protein id: At4g11260.1, supported by cDNA:
152712., supported by cDNA: gi_13877932, supported by
cDNA: gi_16226817, supported by cDNA: gi_17017309
[Arabidopsis thaliana] gi|7486697|pir||T13017
hypothetical protein F8L21.50 - Arabidopsis thaliana
gi|5596472|emb|CAB51410.1| putative protein [Arabidopsis
thaliana] gi|7267825|emb|CAB81227.1| putative protein
[Arabidopsis thaliana]
gi|13877933|gb|AAK44044.1|AF370229_1 unknown protein
[Arabidopsis thaliana]
gi|16226818|gb|AAL16270.1|AF428340_1 AT4g11260/F8L21_50
[Arabidopsis thaliana]
gi|17017310|gb|AAL33612.1|AF439976_1 SGT1b [Arabidopsis
thaliana] gi|21553597|gb|AAM62690.1| SGT1a [Arabidopsis
thaliana] gi|23297702|gb|AAN12904.1| unknown protein
[Arabidopsis thaliana]
Length = 358
Score = 199 bits (506), Expect = 3e-50
Identities = 107/193 (55%), Positives = 135/193 (69%)
Frame = +1
Query: 100 KDLEKKAKEAFIDDDFSLAVDLYTEAINLDPINANLFADRAQAHLKLNAFTEAVSDANKA 279
K+L +KAKEAF+DDDF +AVDLY++AI+LDP A FADRAQA++K++ FTEAV DANKA
Sbjct: 3 KELAEKAKEAFLDDDFDVAVDLYSKAIDLDPNCAAFFADRAQANIKIDNFTEAVVDANKA 62
Query: 280 IQLDPSLPKAYLRKGTACIKLEEYHTAKVALEKGASFAPDDSRFTNLIQQCDRYIAEESN 459
I+L+P+L KAYLRKGTAC+KLEEY TAK ALEKGAS AP++ +F +I +CD IAEE
Sbjct: 63 IELEPTLAKAYLRKGTACMKLEEYSTAKAALEKGASVAPNEPKFKKMIDECDLRIAEEEK 122
Query: 460 ALTSTLSTTAPLISVPSGDDPRSAVSDGTNKEAETDSSLSQINEVAPSKPKYRYEYYQKP 639
L + + P S T E D+ I AP+KP +R+E+YQKP
Sbjct: 123 DLVQPMPPSLP-------------SSSTTPLATEADAPPVPI-PAAPAKPMFRHEFYQKP 168
Query: 640 EEVVVTIFAKGIP 678
EE VVTIFAK +P
Sbjct: 169 EEAVVTIFAKKVP 181
>gb|AAF18438.1|AF192467_1 Sgt1 [Oryza sativa]
Length = 367
Score = 197 bits (500), Expect = 1e-49
Identities = 106/198 (53%), Positives = 133/198 (66%), Gaps = 1/198 (0%)
Frame = +1
Query: 88 TTTVKDLEKKAKEAFIDDDFSLAVDLYTEAINLDPINANLFADRAQAHLKLNAFTEAVSD 267
T DLE KAK AF+DDDF LA +LYT+AI P A L+ADRAQAH+KL +TEAV+D
Sbjct: 3 TAAASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAVAD 62
Query: 268 ANKAIQLDPSLPKAYLRKGTACIKLEEYHTAKVALEKGASFAPDDSRFTNLIQQCDRYIA 447
ANKAI+LDPS+ KAYLRKG ACI+LEEY TAK ALE G SFA DSRFT L+++CD IA
Sbjct: 63 ANKAIELDPSMHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDERIA 122
Query: 448 EESNALTSTLSTTAPLISVPSGDDPRSAVSDGTNKEAETD-SSLSQINEVAPSKPKYRYE 624
EE LT + V +D +A S + E + D +++ + KPKYR++
Sbjct: 123 EE---LTE--------VPVKKAEDGAAAPSVASFVEEKDDAANMDNTPPMVEVKPKYRHD 171
Query: 625 YYQKPEEVVVTIFAKGIP 678
+Y EVV+TIFAKG+P
Sbjct: 172 FYNSATEVVLTIFAKGVP 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.314 0.129 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,380,737
Number of Sequences: 1393205
Number of extensions: 13976167
Number of successful extensions: 68013
Number of sequences better than 10.0: 889
Number of HSP's better than 10.0 without gapping: 49630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65714
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
