Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007473A_C01 KMC007473A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193498.2| hypothetical protein; protein id: At4g17620.1, ... 194 6e-49
pir||A71446 hypothetical protein - Arabidopsis thaliana gi|22451... 77 2e-13
emb|CAC18206.1| conserved hypothetical protein [Neurospora crass... 75 7e-13
ref|NP_594904.1| may enhance function of nuclear exonuclease by ... 59 3e-08
gb|AAC05281.1| hypothetical protein [Mus musculus] 53 2e-06
>ref|NP_193498.2| hypothetical protein; protein id: At4g17620.1, supported by cDNA:
gi_18491224 [Arabidopsis thaliana]
gi|18491225|gb|AAL69514.1| unknown protein [Arabidopsis
thaliana] gi|22136810|gb|AAM91749.1| unknown protein
[Arabidopsis thaliana]
Length = 544
Score = 194 bits (493), Expect = 6e-49
Identities = 91/113 (80%), Positives = 100/113 (87%)
Frame = -2
Query: 539 REKLLKFWIQSFLAGVPFIVIGFRDDKGRLVRTERLRTKDITQRVKLKNYWQGGVCLAFA 360
REKLLKFWIQSF+AGVP+IV+GFRDD GRLVRTERL T+DI R +LKNYWQGGVCLAFA
Sbjct: 427 REKLLKFWIQSFVAGVPYIVVGFRDDGGRLVRTERLTTRDIAHRARLKNYWQGGVCLAFA 486
Query: 359 DEVLCWLYGTVKENEDYILQYAPPSNRLELLQAQSCPDVITSHLELLQPPS*P 201
DEVLCWLYGTVKENEDYILQ+ P RLELLQAQSCPD IT+H+ LLQ P+ P
Sbjct: 487 DEVLCWLYGTVKENEDYILQFVHPFMRLELLQAQSCPDAITNHVHLLQNPASP 539
>pir||A71446 hypothetical protein - Arabidopsis thaliana
gi|2245120|emb|CAB10542.1| hypothetical protein
[Arabidopsis thaliana] gi|7268514|emb|CAB78765.1|
hypothetical protein [Arabidopsis thaliana]
Length = 1148
Score = 76.6 bits (187), Expect = 2e-13
Identities = 35/47 (74%), Positives = 40/47 (84%)
Frame = -2
Query: 515 IQSFLAGVPFIVIGFRDDKGRLVRTERLRTKDITQRVKLKNYWQGGV 375
IQSF+AGVP+IV+GFRDD GRLVRTERL T+DI R +LKNYWQ V
Sbjct: 1094 IQSFVAGVPYIVVGFRDDGGRLVRTERLTTRDIAHRARLKNYWQVSV 1140
>emb|CAC18206.1| conserved hypothetical protein [Neurospora crassa]
gi|28922691|gb|EAA31915.1| hypothetical protein (
(AL451015) conserved hypothetical protein [Neurospora
crassa] )
Length = 383
Score = 74.7 bits (182), Expect = 7e-13
Identities = 45/122 (36%), Positives = 64/122 (51%), Gaps = 13/122 (10%)
Frame = -2
Query: 533 KLLKFWIQSFLAGVPFIVIGFRDDKGRLVRTERLRTKDITQRVKL--KNYWQGGVCLAFA 360
KL+KFWIQSFL GVP I++GFR G LV T+ RT +I VK + W G C+ FA
Sbjct: 255 KLMKFWIQSFLLGVPKIIVGFRTQDGLLVETKEFRTMEIPLMVKKNGRPKWDGDTCVNFA 314
Query: 359 DEVLCWLYGTVKENEDYILQYAPPSNRLELLQAQSC--PDVITS---------HLELLQP 213
+ L WL T+ + + ++ P S +E+ + + D+IT L QP
Sbjct: 315 NGFLEWLRHTITDEGVWRIKRRPRSAEIEVFKVEEVGHGDIITDEFMNWRIKLELRQAQP 374
Query: 212 PS 207
P+
Sbjct: 375 PT 376
>ref|NP_594904.1| may enhance function of nuclear exonuclease by similarity to yeast
rai1; Dhp1p ( 5'-to-3' exoribonuclease required for
proper chromosome segregation)-interacting protein
[Schizosaccharomyces pombe]
gi|20137678|sp|O13836|DIN1_SCHPO Dhp1-interacting
protein 1 gi|7490894|pir||T37966 hypothetical protein
SPAC19D5.06c - fission yeast (Schizosaccharomyces
pombe) gi|2440182|emb|CAB16716.1| may enhance function
of nuclear exonuclease by similarity to yeast rai1;
Dhp1p ( 5'-to-3' exoribonuclease required for proper
chromosome segregation)-interacting protein
[Schizosaccharomyces pombe] gi|12082195|dbj|BAB20823.1|
Dhp1p-interacting protein [Schizosaccharomyces pombe]
Length = 352
Score = 59.3 bits (142), Expect = 3e-08
Identities = 35/93 (37%), Positives = 48/93 (50%), Gaps = 3/93 (3%)
Frame = -2
Query: 539 REKLLKFWIQSFLAGVPFIVIGFRDDKGRLVRTERLRTKDITQRVK---LKNYWQGGVCL 369
R+KLLK+W QSFL G+ I+IGFRDD G L+ + L T I + ++ N W L
Sbjct: 254 RKKLLKYWAQSFLLGIGRIIIGFRDDNGILIEMKELFTHQIPKMLRPYFKPNDWTPNRLL 313
Query: 368 AFADEVLCWLYGTVKENEDYILQYAPPSNRLEL 270
+ L W+ TVK++ PPS L
Sbjct: 314 VVLEHALEWIKQTVKQH--------PPSTEFTL 338
>gb|AAC05281.1| hypothetical protein [Mus musculus]
Length = 397
Score = 53.1 bits (126), Expect = 2e-06
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = -2
Query: 539 REKLLKFWIQSFLAGVPFIVIGFRDDKGRLVRTERLRTKDITQRVKL-KNYWQGGVCLAF 363
R KLLK+W QSFL GVP +V GFR+ +G + + T ++ + V+ + W VC+ F
Sbjct: 271 RHKLLKWWAQSFLPGVPHVVAGFRNPEGFVCSLKTFPTMEMFENVRNDREGWNPSVCMNF 330
Query: 362 ADEVLCWLYGTVKENE 315
L + TV +++
Sbjct: 331 CAAFLSFAQSTVVQDD 346
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,943,655
Number of Sequences: 1393205
Number of extensions: 10142474
Number of successful extensions: 27152
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 26639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27140
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
