Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007467A_C01 KMC007467A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB11469.1| arginyl-tRNA synthetase [Arabidopsis thaliana] 157 9e-38
ref|NP_194360.1| arginyl-tRNA synthetase; protein id: At4g26300.... 157 9e-38
ref|NP_176826.1| arginyl-tRNA synthetase; protein id: At1g66530.... 150 1e-35
emb|CAB11467.1| arginyl-tRNA synthetase [Arabidopsis thaliana] 144 8e-34
dbj|BAA96752.1| unnamed protein product [Oryza sativa (japonica ... 135 3e-31
>emb|CAB11469.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
Length = 590
Score = 157 bits (397), Expect = 9e-38
Identities = 77/100 (77%), Positives = 86/100 (86%)
Frame = -1
Query: 564 DMEEVKKNGIIVLDHEDERLLGLHLLQFPEVFEEACINLLPNVLCEYLYNLAEIFTKKFY 385
D++E+KK G + LDH DER LGLHLL+F E EEAC NLLP+VLCEYLYNL+E FT +FY
Sbjct: 492 DIDELKKTGKLALDHADERALGLHLLRFAETVEEACTNLLPSVLCEYLYNLSEHFT-RFY 550
Query: 384 SNCQVVGSPEETSRLLLCEATAIVMRKCFDLLGIIPVYKL 265
SNCQV GSPEETSRLLLCEATAIVMRKCF LLGI PVYK+
Sbjct: 551 SNCQVNGSPEETSRLLLCEATAIVMRKCFHLLGITPVYKI 590
>ref|NP_194360.1| arginyl-tRNA synthetase; protein id: At4g26300.1 [Arabidopsis
thaliana] gi|7437759|pir||T06014 arginine-tRNA ligase
(EC 6.1.1.19) - Arabidopsis thaliana
gi|2632105|emb|CAB11468.1| arginyl-tRNA synthetase
[Arabidopsis thaliana] gi|4539426|emb|CAB38959.1|
arginyl-tRNA synthetase [Arabidopsis thaliana]
gi|7269482|emb|CAB79485.1| arginyl-tRNA synthetase
[Arabidopsis thaliana]
Length = 642
Score = 157 bits (397), Expect = 9e-38
Identities = 77/100 (77%), Positives = 86/100 (86%)
Frame = -1
Query: 564 DMEEVKKNGIIVLDHEDERLLGLHLLQFPEVFEEACINLLPNVLCEYLYNLAEIFTKKFY 385
D++E+KK G + LDH DER LGLHLL+F E EEAC NLLP+VLCEYLYNL+E FT +FY
Sbjct: 544 DIDELKKTGKLALDHADERALGLHLLRFAETVEEACTNLLPSVLCEYLYNLSEHFT-RFY 602
Query: 384 SNCQVVGSPEETSRLLLCEATAIVMRKCFDLLGIIPVYKL 265
SNCQV GSPEETSRLLLCEATAIVMRKCF LLGI PVYK+
Sbjct: 603 SNCQVNGSPEETSRLLLCEATAIVMRKCFHLLGITPVYKI 642
>ref|NP_176826.1| arginyl-tRNA synthetase; protein id: At1g66530.1, supported by
cDNA: gi_14030684, supported by cDNA: gi_20334711
[Arabidopsis thaliana] gi|25293281|pir||A96691
arginyl-tRNA synthetase [imported] - Arabidopsis
thaliana gi|12322268|gb|AAG51163.1|AC074025_13
arginyl-tRNA synthetase [Arabidopsis thaliana]
gi|14030685|gb|AAK53017.1|AF375433_1 At1g66530/F28G11_14
[Arabidopsis thaliana] gi|20334712|gb|AAM16217.1|
At1g66530/F28G11_14 [Arabidopsis thaliana]
Length = 590
Score = 150 bits (379), Expect = 1e-35
Identities = 77/100 (77%), Positives = 82/100 (82%)
Frame = -1
Query: 564 DMEEVKKNGIIVLDHEDERLLGLHLLQFPEVFEEACINLLPNVLCEYLYNLAEIFTKKFY 385
D++E+KK G I LDH ER LGLHLLQF E EEAC LLPNVLC+YLY L+E FT KFY
Sbjct: 492 DIDELKKTGKIALDHAAERALGLHLLQFAETVEEACTTLLPNVLCKYLYYLSEEFT-KFY 550
Query: 384 SNCQVVGSPEETSRLLLCEATAIVMRKCFDLLGIIPVYKL 265
SNCQV GS EETSRLLLCEATAIVMRKCF LLGI PVYKL
Sbjct: 551 SNCQVNGSAEETSRLLLCEATAIVMRKCFHLLGITPVYKL 590
>emb|CAB11467.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
Length = 589
Score = 144 bits (363), Expect = 8e-34
Identities = 76/100 (76%), Positives = 81/100 (81%)
Frame = -1
Query: 564 DMEEVKKNGIIVLDHEDERLLGLHLLQFPEVFEEACINLLPNVLCEYLYNLAEIFTKKFY 385
D++E+KK G I LDH ER LGLHLLQF E EEAC LLPNVLC+YLY L+E FT KFY
Sbjct: 492 DIDELKKTGKIALDHAAERALGLHLLQFAETVEEACTTLLPNVLCKYLYYLSEEFT-KFY 550
Query: 384 SNCQVVGSPEETSRLLLCEATAIVMRKCFDLLGIIPVYKL 265
SNCQV GS EETSRLLLCE TAIVMRKCF LLGI PVYKL
Sbjct: 551 SNCQVNGSAEETSRLLLCE-TAIVMRKCFHLLGITPVYKL 589
>dbj|BAA96752.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9757672|dbj|BAB08191.1| Similar to Arabidopsis
thaliana arginine--tRNA ligase (T06014) [Oryza sativa
(japonica cultivar-group)]
Length = 605
Score = 135 bits (341), Expect = 3e-31
Identities = 66/100 (66%), Positives = 81/100 (81%)
Frame = -1
Query: 564 DMEEVKKNGIIVLDHEDERLLGLHLLQFPEVFEEACINLLPNVLCEYLYNLAEIFTKKFY 385
D+E++K G I L H ER LGLHL+QF EV E+AC +L P+ LC+YLY+L+ F+K FY
Sbjct: 507 DVEKLKMTGAITLGHPYERFLGLHLIQFTEVVEQACADLQPHRLCDYLYSLSLTFSK-FY 565
Query: 384 SNCQVVGSPEETSRLLLCEATAIVMRKCFDLLGIIPVYKL 265
+NCQVVGSPEETSRLLLCEAT I+MR+CF LLGI PV+KL
Sbjct: 566 TNCQVVGSPEETSRLLLCEATGIIMRQCFHLLGITPVHKL 605
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,456,849
Number of Sequences: 1393205
Number of extensions: 10167337
Number of successful extensions: 24158
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 23175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24044
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
