Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007448A_C01 KMC007448A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174210.1| 26S proteasome regulatory subunit (RPN6), putat... 216 1e-55
pir||T52033 19S proteosome subunit 9 [imported] - Arabidopsis th... 213 1e-54
ref|NP_477474.1| Proteasome p44.5 subunit CG10149-PB gi|24653696... 97 9e-20
gb|EAA01750.1| agCP12203 [Anopheles gambiae str. PEST] 96 2e-19
gb|AAB58732.1| 26S proteasome subunit 9 [Homo sapiens] 95 6e-19
>ref|NP_174210.1| 26S proteasome regulatory subunit (RPN6), putative; protein id:
At1g29150.1, supported by cDNA: 39755., supported by
cDNA: gi_15810544, supported by cDNA: gi_3450888
[Arabidopsis thaliana] gi|25332513|pir||A86414
hypothetical protein F28N24.15 - Arabidopsis thaliana
gi|9502423|gb|AAF88122.1|AC021043_15 Similar to 26S
proteasome subunits [Arabidopsis thaliana]
gi|13877881|gb|AAK44018.1|AF370203_1 putative 19S
proteosome subunit 9 [Arabidopsis thaliana]
gi|15810545|gb|AAL07160.1| putative 19S proteosome
subunit 9 [Arabidopsis thaliana]
Length = 419
Score = 216 bits (550), Expect = 1e-55
Identities = 112/136 (82%), Positives = 125/136 (91%)
Frame = +1
Query: 127 ATTESVALALEAKDPSEGISILYRVLEDPSSSPEALRMKEQAITNLTDLLRQENRGEDLR 306
ATTE+++LALEA SE I+ILY+VLEDPSSSPEA+R+KEQAITNL D L +E RGEDLR
Sbjct: 6 ATTETISLALEANS-SEAITILYQVLEDPSSSPEAIRIKEQAITNLCDRLTEEKRGEDLR 64
Query: 307 SLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGSSDLQIALCKEMVQWTRAEKRTFLRQ 486
LLT+LRPFFSLIPKAKTAKIVRGIID+VAKIPG++DLQI LCKEMV+WTRAEKRTFLRQ
Sbjct: 65 KLLTKLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTTDLQITLCKEMVEWTRAEKRTFLRQ 124
Query: 487 RVEARLAALLMETKEY 534
RVEARLAALLME KEY
Sbjct: 125 RVEARLAALLMENKEY 140
>pir||T52033 19S proteosome subunit 9 [imported] - Arabidopsis thaliana
gi|3450889|gb|AAC34120.1| 19S proteosome subunit 9
[Arabidopsis thaliana]
Length = 421
Score = 213 bits (542), Expect = 1e-54
Identities = 111/136 (81%), Positives = 124/136 (90%)
Frame = +1
Query: 127 ATTESVALALEAKDPSEGISILYRVLEDPSSSPEALRMKEQAITNLTDLLRQENRGEDLR 306
ATTE+++LALEA SE I+ILY+VLEDPSSSPEA+R+KEQAITNL D L +E RGEDLR
Sbjct: 6 ATTETISLALEANS-SEAITILYQVLEDPSSSPEAIRIKEQAITNLCDRLTEEKRGEDLR 64
Query: 307 SLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGSSDLQIALCKEMVQWTRAEKRTFLRQ 486
LLT+LRPFFSLIPKAKTAKIVR IID+VAKIPG++DLQI LCKEMV+WTRAEKRTFLRQ
Sbjct: 65 KLLTKLRPFFSLIPKAKTAKIVRRIIDAVAKIPGTTDLQITLCKEMVEWTRAEKRTFLRQ 124
Query: 487 RVEARLAALLMETKEY 534
RVEARLAALLME KEY
Sbjct: 125 RVEARLAALLMENKEY 140
>ref|NP_477474.1| Proteasome p44.5 subunit CG10149-PB gi|24653696|ref|NP_725412.1|
Proteasome p44.5 subunit CG10149-PA
gi|5679146|gb|AAD46879.1|AF160939_1 BcDNA.LD18931
[Drosophila melanogaster]
gi|6434956|gb|AAF08390.1|AF145309_1 26S proteasome
regulatory complex subunit p42B [Drosophila
melanogaster] gi|7303147|gb|AAF58212.1| CG10149-PB
[Drosophila melanogaster] gi|7303148|gb|AAF58213.1|
CG10149-PA [Drosophila melanogaster]
Length = 422
Score = 97.4 bits (241), Expect = 9e-20
Identities = 50/143 (34%), Positives = 82/143 (56%)
Frame = +1
Query: 106 MSSSYLPATTESVALALEAKDPSEGISILYRVLEDPSSSPEALRMKEQAITNLTDLLRQE 285
M+ + L ++++ + S ++ L R E + E +R+KEQ I +L +QE
Sbjct: 1 MAGATLFERAQALSSVNREEQDSSLLNKLVRDQEGAENDEERIRIKEQGILQQGELYKQE 60
Query: 286 NRGEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGSSDLQIALCKEMVQWTRAE 465
+ ++L L+ RPF S I KAK AK+VR ++D + + +++ LCK+ ++W + E
Sbjct: 61 GKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE 120
Query: 466 KRTFLRQRVEARLAALLMETKEY 534
KRTFLRQ +EARL AL +T Y
Sbjct: 121 KRTFLRQSLEARLIALYFDTALY 143
>gb|EAA01750.1| agCP12203 [Anopheles gambiae str. PEST]
Length = 427
Score = 96.3 bits (238), Expect = 2e-19
Identities = 46/113 (40%), Positives = 69/113 (60%)
Frame = +1
Query: 196 RVLEDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLTQLRPFFSLIPKAKTAKIVR 375
R LE + E +R KEQ I L + ++E + ++L L+ RPF S + KAK AK+VR
Sbjct: 36 RDLEVDENDEEQIRQKEQKILELGETYKKEGKAKELADLIKVTRPFLSFLSKAKAAKLVR 95
Query: 376 GIIDSVAKIPGSSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMETKEY 534
++D + + +++ LCKE ++W + EKRTFLRQ +EARL AL +T Y
Sbjct: 96 SLVDLFLDLEAETGIEVQLCKECIEWAKQEKRTFLRQSLEARLIALYFDTGMY 148
>gb|AAB58732.1| 26S proteasome subunit 9 [Homo sapiens]
Length = 422
Score = 94.7 bits (234), Expect = 6e-19
Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 2/132 (1%)
Frame = +1
Query: 145 ALALEAKDPSEGISILYRVLEDP--SSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLT 318
A +L + D I IL+ +++ + EA+++KEQ+I L LL + + +L LL
Sbjct: 12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLK 71
Query: 319 QLRPFFSLIPKAKTAKIVRGIIDSVAKIPGSSDLQIALCKEMVQWTRAEKRTFLRQRVEA 498
+RPF + I KAK A++VR ++D + ++ ++ LC E ++W ++EKRTFLRQ +EA
Sbjct: 72 YVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLESIEWAKSEKRTFLRQALEA 131
Query: 499 RLAALLMETKEY 534
RL +L +TK Y
Sbjct: 132 RLVSLYFDTKRY 143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,516,018
Number of Sequences: 1393205
Number of extensions: 9732034
Number of successful extensions: 28827
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 27886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28814
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
