Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007443A_C01 KMC007443A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43368.1| unknown protein [Arabidopsis thaliana] 196 2e-49
ref|NP_567623.1| hypothetical protein; protein id: At4g21320.1 [... 160 9e-39
pir||T05174 hypothetical protein T6K22.50 - Arabidopsis thaliana... 160 9e-39
ref|NP_601739.1| hypothetical protein [Corynebacterium glutamicu... 76 3e-13
ref|NP_613679.1| Uncharacterized conserved protein [Methanopyrus... 46 3e-04
>dbj|BAC43368.1| unknown protein [Arabidopsis thaliana]
Length = 286
Score = 196 bits (497), Expect = 2e-49
Identities = 90/122 (73%), Positives = 109/122 (88%)
Frame = -1
Query: 541 YGAYIPPAPRSSELVEDVDLLIRRAERCLEAGADMILIDADDVCKQADHMRADIIAKIIG 362
+G+Y+ P PRSSE VED+DLLIR+AERCLEAGAD I+IDADDVCK AD +RADIIAK+IG
Sbjct: 164 FGSYVVPEPRSSEFVEDIDLLIRKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIG 223
Query: 361 RLGIEKTMFEASNQKASEWFIKQYGPKVNLFIDHSHLVDVECLRGRNLGRNHASVLGSSY 182
RLGIEKTMFEAS+ K EWFIK+YGP VNL++DHS ++D+ECLRGR+LG++H SVL SSY
Sbjct: 224 RLGIEKTMFEASDAKLVEWFIKRYGPNVNLYVDHSQIMDLECLRGRHLGKDHQSVLSSSY 283
Query: 181 YL 176
+L
Sbjct: 284 FL 285
>ref|NP_567623.1| hypothetical protein; protein id: At4g21320.1 [Arabidopsis
thaliana]
Length = 320
Score = 160 bits (405), Expect = 9e-39
Identities = 81/140 (57%), Positives = 98/140 (69%), Gaps = 32/140 (22%)
Frame = -1
Query: 541 YGAYIPPAPRSSELVEDVDLLIRRAERCLEAGADMILIDADDVCKQADHMRADIIAKIIG 362
+G+Y+ P PRSSE VED+DLLIR+AERCLEAGAD I+IDADDVCK AD +RADIIAK+IG
Sbjct: 164 FGSYVVPEPRSSEFVEDIDLLIRKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIG 223
Query: 361 RLGIEKTMFEASNQKASEWFIKQYGP--------------------------------KV 278
RLGIEKTMFEAS+ K EWFIK+YGP +V
Sbjct: 224 RLGIEKTMFEASDAKLVEWFIKRYGPNVFADTLVLSIIFNLLFEWSPSQDSYLFVLVFQV 283
Query: 277 NLFIDHSHLVDVECLRGRNL 218
NL++DHS ++D+ECLRGR+L
Sbjct: 284 NLYVDHSQIMDLECLRGRHL 303
>pir||T05174 hypothetical protein T6K22.50 - Arabidopsis thaliana
gi|3402751|emb|CAA20197.1| putative protein [Arabidopsis
thaliana] gi|7268928|emb|CAB79131.1| putative protein
[Arabidopsis thaliana]
Length = 1736
Score = 160 bits (405), Expect = 9e-39
Identities = 81/140 (57%), Positives = 98/140 (69%), Gaps = 32/140 (22%)
Frame = -1
Query: 541 YGAYIPPAPRSSELVEDVDLLIRRAERCLEAGADMILIDADDVCKQADHMRADIIAKIIG 362
+G+Y+ P PRSSE VED+DLLIR+AERCLEAGAD I+IDADDVCK AD +RADIIAK+IG
Sbjct: 164 FGSYVVPEPRSSEFVEDIDLLIRKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIG 223
Query: 361 RLGIEKTMFEASNQKASEWFIKQYGP--------------------------------KV 278
RLGIEKTMFEAS+ K EWFIK+YGP +V
Sbjct: 224 RLGIEKTMFEASDAKLVEWFIKRYGPNVFADTLVLSIIFNLLFEWSPSQDSYLFVLVFQV 283
Query: 277 NLFIDHSHLVDVECLRGRNL 218
NL++DHS ++D+ECLRGR+L
Sbjct: 284 NLYVDHSQIMDLECLRGRHL 303
>ref|NP_601739.1| hypothetical protein [Corynebacterium glutamicum ATCC 13032]
gi|21325311|dbj|BAB99932.1| Uncharacterized ACR
[Corynebacterium glutamicum ATCC 13032]
Length = 278
Score = 75.9 bits (185), Expect = 3e-13
Identities = 35/97 (36%), Positives = 60/97 (61%)
Frame = -1
Query: 520 APRSSELVEDVDLLIRRAERCLEAGADMILIDADDVCKQADHMRADIIAKIIGRLGIEKT 341
A ++E +D+ L+ R ++ L+AGA +I+I+++ + + A II LG+E
Sbjct: 164 AELAAEGKKDIGDLVDRGKKALDAGASIIMIESEGITENVTEWDTGAAASIINGLGLENV 223
Query: 340 MFEASNQKASEWFIKQYGPKVNLFIDHSHLVDVECLR 230
MFEA++ EW++K YG + NLF+DHS ++ +E LR
Sbjct: 224 MFEAADGPVFEWYVKNYGNECNLFVDHSQILQLEGLR 260
>ref|NP_613679.1| Uncharacterized conserved protein [Methanopyrus kandleri AV19]
gi|19886758|gb|AAM01609.1| (2R)-phospho-3-sulfolactate
synthase [Methanopyrus kandleri AV19]
Length = 256
Score = 46.2 bits (108), Expect = 3e-04
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Frame = -1
Query: 481 LIRRAERCLEAGADMILIDADDVCKQAD-----HMRADIIAKIIGRLGIEKTMFEASNQK 317
++ R +C+EAGA+ ++++A + K R ++++I+ +GI++ MFEA ++
Sbjct: 151 IVGRMNKCVEAGAEYVIVEARESGKHGPMGAEKRERVRVLSEIVKGVGIQRVMFEAPEKE 210
Query: 316 ASEWFIKQYGPKVNL 272
I ++GP+VN+
Sbjct: 211 QQFELIVKFGPEVNI 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,556,632
Number of Sequences: 1393205
Number of extensions: 10034874
Number of successful extensions: 21964
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 21300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21946
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
