Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007440A_C01 KMC007440A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD34458.1| Skp1 [Medicago sativa] 164 7e-40
gb|AAC63273.1| SKP1-like protein [Nicotiana clevelandii] 159 1e-38
pir||T17030 fimbriata-associated protein - garden snapdragon (fr... 157 9e-38
ref|NP_565123.1| E3 ubiquitin ligase SCF complex subunit, SKP1/A... 155 2e-37
gb|AAB38862.1| homologue to SKP1 [Arabidopsis thaliana] 155 2e-37
>gb|AAD34458.1| Skp1 [Medicago sativa]
Length = 153
Score = 164 bits (414), Expect = 7e-40
Identities = 78/89 (87%), Positives = 85/89 (94%)
Frame = -3
Query: 506 ANPDEKPTEDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPE 327
A ++KP EDELK+WD++FVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPE
Sbjct: 65 AAAEDKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPE 124
Query: 326 EIRQTFNIKNDFTPEEEEEVRRENPWAFE 240
EIR+TFNIKNDF+PEEEEEVRREN WAFE
Sbjct: 125 EIRKTFNIKNDFSPEEEEEVRRENQWAFE 153
>gb|AAC63273.1| SKP1-like protein [Nicotiana clevelandii]
Length = 153
Score = 159 bits (403), Expect = 1e-38
Identities = 77/86 (89%), Positives = 83/86 (95%)
Frame = -3
Query: 497 DEKPTEDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIR 318
++K ED+LKA+DADFVKVDQ+TLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIR
Sbjct: 68 EDKAVEDDLKAFDADFVKVDQSTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIR 127
Query: 317 QTFNIKNDFTPEEEEEVRRENPWAFE 240
+TFNIKNDFTPEEEEEVRREN WAFE
Sbjct: 128 KTFNIKNDFTPEEEEEVRRENAWAFE 153
>pir||T17030 fimbriata-associated protein - garden snapdragon (fragment)
gi|2673868|emb|CAA75117.1| fimbriata-associated protein
[Antirrhinum majus]
Length = 161
Score = 157 bits (396), Expect = 9e-38
Identities = 76/82 (92%), Positives = 81/82 (98%)
Frame = -3
Query: 485 TEDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRQTFN 306
++DELKA+DADFVKVDQATLFDLILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR+TFN
Sbjct: 80 SDDELKAFDADFVKVDQATLFDLILAANYLNIKTLLDLTCQTVADMIKGKTPEEIRKTFN 139
Query: 305 IKNDFTPEEEEEVRRENPWAFE 240
IKNDFTPEEEEEVRREN WAFE
Sbjct: 140 IKNDFTPEEEEEVRRENQWAFE 161
>ref|NP_565123.1| E3 ubiquitin ligase SCF complex subunit, SKP1/ASK1 (At1); protein
id: At1g75950.1, supported by cDNA: gi_1432082,
supported by cDNA: gi_19424109, supported by cDNA:
gi_21281126, supported by cDNA: gi_3068806, supported by
cDNA: gi_3719208 [Arabidopsis thaliana]
gi|11291720|pir||T51309 Skp1 homolog [imported] -
Arabidopsis thaliana gi|1432083|gb|AAB17535.1| homolog
to Skp1p, an evolutionarily conserved kinetochore
protein in budding yeast [Arabidopsis thaliana]
gi|3068807|gb|AAC14444.1| Skp1 homolog [Arabidopsis
thaliana] gi|3719209|gb|AAC63109.1| UIP1 [Arabidopsis
thaliana] gi|6721107|gb|AAF26761.1|AC007396_10 T4O12.17
[Arabidopsis thaliana] gi|19424110|gb|AAL87354.1|
putative SKP1/ASK1 protein At1 [Arabidopsis thaliana]
gi|21281127|gb|AAM45019.1| putative SKP1/ASK1 protein
At1 [Arabidopsis thaliana]
Length = 160
Score = 155 bits (393), Expect = 2e-37
Identities = 73/82 (89%), Positives = 80/82 (97%)
Frame = -3
Query: 485 TEDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRQTFN 306
++D+LKAWDADF+K+DQATLF+LILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFN
Sbjct: 79 SDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFN 138
Query: 305 IKNDFTPEEEEEVRRENPWAFE 240
IKNDFTPEEEEEVRREN WAFE
Sbjct: 139 IKNDFTPEEEEEVRRENQWAFE 160
>gb|AAB38862.1| homologue to SKP1 [Arabidopsis thaliana]
Length = 129
Score = 155 bits (393), Expect = 2e-37
Identities = 73/82 (89%), Positives = 80/82 (97%)
Frame = -3
Query: 485 TEDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRQTFN 306
++D+LKAWDADF+K+DQATLF+LILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFN
Sbjct: 48 SDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFN 107
Query: 305 IKNDFTPEEEEEVRRENPWAFE 240
IKNDFTPEEEEEVRREN WAFE
Sbjct: 108 IKNDFTPEEEEEVRRENQWAFE 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,587,598
Number of Sequences: 1393205
Number of extensions: 8976217
Number of successful extensions: 22270
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 21652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22240
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
