Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007420A_C01 KMC007420A_c01
(441 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD15833.1| variant 2 major surface glycoprotein [Pneumocysti... 40 0.005
emb|CAD21376.1| related to NsdD protein [Neurospora crassa] gi|2... 38 0.025
ref|ZP_00033659.1| hypothetical protein [Burkholderia fungorum] 38 0.025
gb|AAC95283.1| MLL [Homo sapiens] 38 0.032
gb|AAC37520.1| MLL-AF4 der(11) fusion protein gi|449754|prf||191... 38 0.032
>gb|AAD15833.1| variant 2 major surface glycoprotein [Pneumocystis carinii]
Length = 1101
Score = 40.4 bits (93), Expect = 0.005
Identities = 29/68 (42%), Positives = 34/68 (49%), Gaps = 2/68 (2%)
Frame = -3
Query: 439 PSSLPNWMPAPTPNPAPPVVNGGSSVTPTRVTRAAAAAASTPAGVPNGVAGT-GPKKRGR 263
P+ P PAP PAPP GSS +P AA ++ST +G PN GT G K G
Sbjct: 837 PAQPPLAPPAPPAPPAPPA--SGSSSSPAAPEAPAAGSSSTSSGTPNAADGTKGNTKLGL 894
Query: 262 -PRKYV*G 242
R YV G
Sbjct: 895 VKRAYVAG 902
>emb|CAD21376.1| related to NsdD protein [Neurospora crassa]
gi|28922074|gb|EAA31340.1| hypothetical protein
[Neurospora crassa]
Length = 445
Score = 38.1 bits (87), Expect = 0.025
Identities = 30/94 (31%), Positives = 43/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 116 PTNYPPEAASNGEEVRPTTLPYATIKITFSFSNYFRKNPK-VYPSHILPRPPPLLRPSSS 292
PT+YPP A ++ + P+A S+ +P+ ++PS PRP PL P+ S
Sbjct: 85 PTSYPPHAPTSLPPTQSLPSPFAPSGPPRSYDVDKHPSPRALHPSSGFPRPDPL--PAFS 142
Query: 293 NPIGNTCRCRSCSSSSPSNPRRCHTTPTIHHRRS 394
+P R SS P P +T PT H S
Sbjct: 143 DP------ARPQLSSRPPPPPPLNTFPTHHQHPS 170
>ref|ZP_00033659.1| hypothetical protein [Burkholderia fungorum]
Length = 610
Score = 38.1 bits (87), Expect = 0.025
Identities = 22/58 (37%), Positives = 25/58 (42%)
Frame = -3
Query: 433 SLPNWMPAPTPNPAPPVVNGGSSVTPTRVTRAAAAAASTPAGVPNGVAGTGPKKRGRP 260
S P P PTP PAP S TP + AA A S+PA P+ V P P
Sbjct: 140 SAPTQNPTPTPRPAP-------SPTPAPASSPAATATSSPAATPSPVPSPSPAPSPSP 190
Score = 31.6 bits (70), Expect = 2.3
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 5/51 (9%)
Frame = -3
Query: 439 PSSLPNWMPAPTPNPAP-----PVVNGGSSVTPTRVTRAAAAAASTPAGVP 302
PS +P+ PAP+P+P+P P + S +PT A TP+ P
Sbjct: 176 PSPVPSPSPAPSPSPSPSPSPSPSPSPSPSPSPTPTPSPTPAPTPTPSPTP 226
>gb|AAC95283.1| MLL [Homo sapiens]
Length = 479
Score = 37.7 bits (86), Expect = 0.032
Identities = 22/45 (48%), Positives = 25/45 (54%), Gaps = 2/45 (4%)
Frame = -3
Query: 418 MPAPTPNPAPPVVNGGSSVTPT--RVTRAAAAAASTPAGVPNGVA 290
+PA P PPV GG P+ V AAAAA S+ AGVP G A
Sbjct: 35 VPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAA 79
>gb|AAC37520.1| MLL-AF4 der(11) fusion protein gi|449754|prf||1919460A MLL-AF4
fusion protein
Length = 2311
Score = 37.7 bits (86), Expect = 0.032
Identities = 22/45 (48%), Positives = 25/45 (54%), Gaps = 2/45 (4%)
Frame = -3
Query: 418 MPAPTPNPAPPVVNGGSSVTPT--RVTRAAAAAASTPAGVPNGVA 290
+PA P PPV GG P+ V AAAAA S+ AGVP G A
Sbjct: 35 VPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAA 79
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,001,495
Number of Sequences: 1393205
Number of extensions: 10613974
Number of successful extensions: 82452
Number of sequences better than 10.0: 764
Number of HSP's better than 10.0 without gapping: 59482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77690
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
