Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007400A_C01 KMC007400A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P18126|GUNB_PSEFL Endoglucanase B precursor (Endo-1,4-beta-gl... 32 5.7
dbj|BAB61140.1| putative asparaginyl-tRNA synthetase [Oryza sati... 32 5.7
ref|XP_149349.1| hypothetical protein XP_149349 [Mus musculus] 32 7.5
dbj|BAC57697.1| putative receptor-like protein kinase [Oryza sat... 31 9.8
>sp|P18126|GUNB_PSEFL Endoglucanase B precursor (Endo-1,4-beta-glucanase) (Cellulase)
(EGB) gi|94841|pir||S10527 endoglucanase B precursor -
Pseudomonas fluorescens gi|45498|emb|CAA36844.1|
precursor protein (AA-29 to 482) [Cellvibrio japonicus]
Length = 511
Score = 32.0 bits (71), Expect = 5.7
Identities = 19/84 (22%), Positives = 42/84 (49%), Gaps = 2/84 (2%)
Frame = +3
Query: 321 SQATKIRFA*ECKTFSNLHDIESSRKNTW--DQTRSCISRFACSSRRFPQDHLHLFFNSP 494
S ++ + A C + L + ++ N W + RSC++R CS++ P + ++P
Sbjct: 170 SSSSVLTGAQACNWYGTLTPLCNNTSNGWGYEDGRSCVARTTCSAQPAPYGIVSTSSSTP 229
Query: 495 VIASSKLKGTEESTENPNATISFS 566
+ +SS + + S+ + ++ S S
Sbjct: 230 LSSSSSSRSSVASSSSLSSATSSS 253
>dbj|BAB61140.1| putative asparaginyl-tRNA synthetase [Oryza sativa (japonica
cultivar-group)] gi|15408636|dbj|BAB64053.1| putative
asparaginyl-tRNA synthetase [Oryza sativa (japonica
cultivar-group)]
Length = 559
Score = 32.0 bits (71), Expect = 5.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 360 TFSNLHDIES--SRKNTWDQTRSCISRFACSSRRFPQDHLHLFFNSPVIASSKLKGTEE 530
T NL D+ SR NT + AC++ RF ++ L+ ++P+I +S +G E
Sbjct: 138 TLENLRDVVHLRSRTNTIGAVARIRHQLACATHRFFDENGFLYVHTPIITTSDCEGAGE 196
>ref|XP_149349.1| hypothetical protein XP_149349 [Mus musculus]
Length = 123
Score = 31.6 bits (70), Expect = 7.5
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 191 AKKLWYYHNLCIT-EIDTK---DLKGFRSLAWKNMLLECGTGTTAKRKSSY*DTLCI 349
A + W H L I EID+K +++G LAW + L CG+ + R + T+C+
Sbjct: 56 ASESWGSHFLKIQQEIDSKQQKEVQGIMELAWSSCLERCGSWSFQVRVCGFWGTMCL 112
>dbj|BAC57697.1| putative receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 677
Score = 31.2 bits (69), Expect = 9.8
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Frame = +1
Query: 133 NLQHRTEVSLHYL------LLIAIKC*ETMVLPQPLY---NRNRYKGPERLQISSMEKYA 285
+LQHR V LH L++ L + LY N + +R QI ++ A
Sbjct: 398 HLQHRNLVQLHGYCRRKSELILVYDYMSNGSLDKHLYGQENNSTLTWAQRFQI--IKDIA 455
Query: 286 VGMWYWHNS*EEVKLLRYALHKNVKLSRICMTLNLHGRI 402
G+ Y H E+V LH+++K S I + N++GR+
Sbjct: 456 SGLLYLHEEWEKV-----ILHRDIKPSNILLDDNMNGRL 489
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,099,633
Number of Sequences: 1393205
Number of extensions: 8875826
Number of successful extensions: 19420
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19406
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
