Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007373A_C01 KMC007373A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195905.1| putative protein; protein id: At5g02850.1 [Arab... 45 5e-04
ref|NP_457036.1| polyphosphate kinase [Salmonella enterica subsp... 32 5.7
ref|NP_461436.1| polyphosphate kinase, component of RNA degrados... 32 5.7
sp|O13290|DYHC_SCHPO Dynein heavy chain, cytosolic (DYHC) gi|112... 32 7.5
emb|CAB90788.1| dynein heavy chain, cytosolic [Schizosaccharomyc... 32 7.5
>ref|NP_195905.1| putative protein; protein id: At5g02850.1 [Arabidopsis thaliana]
gi|11283451|pir||T48306 hypothetical protein F9G14.160 -
Arabidopsis thaliana gi|7413560|emb|CAB86039.1| putative
protein [Arabidopsis thaliana]
Length = 426
Score = 45.4 bits (106), Expect = 5e-04
Identities = 24/33 (72%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
Frame = -1
Query: 572 PEVIQVQHVNLD-LGGSDSSDYSSDEASSDDED 477
P+VIQV+ V LD L DSSDYSSD+ASSDDED
Sbjct: 394 PDVIQVRAVQLDILEDDDSSDYSSDDASSDDED 426
>ref|NP_457036.1| polyphosphate kinase [Salmonella enterica subsp. enterica serovar
Typhi] gi|29140884|ref|NP_804226.1| polyphosphate kinase
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
gi|21542184|sp|Q8Z4R0|PPK_SALTI Polyphosphate kinase
(Polyphosphoric acid kinase) (ATP-polyphosphate
phosphotransferase) gi|25345235|pir||AC0819
polyphosphate kinase (EC 2.7.4.1) [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18) gi|16503719|emb|CAD02703.1| polyphosphate
kinase [Salmonella enterica subsp. enterica serovar
Typhi] gi|29136509|gb|AAO68075.1| polyphosphate kinase
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
Length = 688
Score = 32.0 bits (71), Expect = 5.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 446 QFEMINH*ILNLHHQSWLHHYYNHY 520
Q +IN L+++ QSWL HY+ HY
Sbjct: 106 QIFLINERQLSVNQQSWLRHYFKHY 130
>ref|NP_461436.1| polyphosphate kinase, component of RNA degradosome [Salmonella
typhimurium LT2] gi|13878619|sp|O86090|PPK_SALTY
Polyphosphate kinase (Polyphosphoric acid kinase)
(ATP-polyphosphate phosphotransferase)
gi|3550417|gb|AAC34890.1| polyphosphate kinase
[Salmonella typhimurium] gi|16421043|gb|AAL21395.1|
polyphosphate kinase [Salmonella typhimurium LT2]
Length = 688
Score = 32.0 bits (71), Expect = 5.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 446 QFEMINH*ILNLHHQSWLHHYYNHY 520
Q +IN L+++ QSWL HY+ HY
Sbjct: 106 QIFLINERQLSVNQQSWLRHYFKHY 130
>sp|O13290|DYHC_SCHPO Dynein heavy chain, cytosolic (DYHC) gi|11276944|pir||T43274 dynein
heavy chain, cytosolic - fission yeast
(Schizosaccharomyces pombe) gi|2351081|dbj|BAA22056.1|
cytoplasmic dynein heavy chain [Schizosaccharomyces
pombe]
Length = 4196
Score = 31.6 bits (70), Expect = 7.5
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Frame = -2
Query: 535 LEEVTVVIIVVMKPALMMKIEDSMIDHLKLTTLQAL---------------LIHLFGVLC 401
L V+ I++ +K L + + D++ D + LQ+ +I+L+G C
Sbjct: 11 LSTVSDEILIFLKKLLSLSVSDNLDDICETIALQSTFVDTFRSFINDEYYTVIYLYGSPC 70
Query: 400 -----TSKDSCLHDHAYIQWTKALS*IY 332
TS DSC + QWT L ++
Sbjct: 71 LTSSPTSPDSCTFGNMTFQWTSLLQDVF 98
>emb|CAB90788.1| dynein heavy chain, cytosolic [Schizosaccharomyces pombe]
Length = 2340
Score = 31.6 bits (70), Expect = 7.5
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Frame = -2
Query: 535 LEEVTVVIIVVMKPALMMKIEDSMIDHLKLTTLQAL---------------LIHLFGVLC 401
L V+ I++ +K L + + D++ D + LQ+ +I+L+G C
Sbjct: 11 LSTVSDEILIFLKKLLSLSVSDNLDDICETIALQSTFVDTFRSFINDEYYTVIYLYGSPC 70
Query: 400 -----TSKDSCLHDHAYIQWTKALS*IY 332
TS DSC + QWT L ++
Sbjct: 71 LTSSPTSPDSCTFGNMTFQWTSLLQDVF 98
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,942,193
Number of Sequences: 1393205
Number of extensions: 8573114
Number of successful extensions: 21244
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20967
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
