Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007340A_C01 KMC007340A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188467.2| unknown protein; protein id: At3g18380.1, suppo... 40 0.015
dbj|BAB01104.1| gb|AAD39678.1~gene_id:MYF24.10~similar to unknow... 40 0.015
ref|NP_505150.1| Reverse transcriptase [Caenorhabditis elegans] ... 38 0.058
ref|NP_502409.1| Putative nuclear protein, nematode specific [Ca... 36 0.29
ref|NP_476723.1| schnurri CG7734-PA gi|19550117|ref|NP_599106.1|... 35 0.64
>ref|NP_188467.2| unknown protein; protein id: At3g18380.1, supported by cDNA:
gi_20260285 [Arabidopsis thaliana]
gi|20260286|gb|AAM13041.1| unknown protein [Arabidopsis
thaliana] gi|28059773|gb|AAO30091.1| unknown protein
[Arabidopsis thaliana]
Length = 348
Score = 40.0 bits (92), Expect = 0.015
Identities = 26/71 (36%), Positives = 43/71 (59%), Gaps = 4/71 (5%)
Frame = -2
Query: 505 RPETDYRLQQLH-AVSDSAHVDQ-QKSGMDAANVYTIRVTSSSETV--PKQQVTNIHQLP 338
RPETDYRLQQLH AV+D A+ +Q Q +DAA + + ++ + P+ + ++ P
Sbjct: 271 RPETDYRLQQLHNAVNDLANSNQHQIPALDAAAKTPLSLPGATVPIVAPESKDPSLSATP 330
Query: 337 TPVLQPNVSLA 305
++QP+ + A
Sbjct: 331 ATLVQPSSNAA 341
>dbj|BAB01104.1| gb|AAD39678.1~gene_id:MYF24.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 323
Score = 40.0 bits (92), Expect = 0.015
Identities = 26/71 (36%), Positives = 43/71 (59%), Gaps = 4/71 (5%)
Frame = -2
Query: 505 RPETDYRLQQLH-AVSDSAHVDQ-QKSGMDAANVYTIRVTSSSETV--PKQQVTNIHQLP 338
RPETDYRLQQLH AV+D A+ +Q Q +DAA + + ++ + P+ + ++ P
Sbjct: 246 RPETDYRLQQLHNAVNDLANSNQHQIPALDAAAKTPLSLPGATVPIVAPESKDPSLSATP 305
Query: 337 TPVLQPNVSLA 305
++QP+ + A
Sbjct: 306 ATLVQPSSNAA 316
>ref|NP_505150.1| Reverse transcriptase [Caenorhabditis elegans]
gi|7332056|gb|AAF60743.1| Hypothetical protein Y51B11A.1
[Caenorhabditis elegans]
Length = 1079
Score = 38.1 bits (87), Expect = 0.058
Identities = 26/93 (27%), Positives = 42/93 (44%), Gaps = 7/93 (7%)
Frame = -2
Query: 439 QKSGMDAANVYTIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTD 260
+ + +A + T V +++ T P+ T T +Q + AP++ + +P + TT
Sbjct: 151 ETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTP 210
Query: 259 VQPGN-------STIVPGSVPFPSIVTTTSAPE 182
VQ ST P S P TTT+APE
Sbjct: 211 VQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPE 243
Score = 37.4 bits (85), Expect = 0.099
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PG 248
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 507 TTPVQTTTTTAPETTSTESPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 566
Query: 247 NSTIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 567 TSTEPPSSSTTPVQTTTTTAPE 588
Score = 37.0 bits (84), Expect = 0.13
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 576 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 635
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 636 TSTEPPSSSTTPVQTTTTTAPE 657
Score = 37.0 bits (84), Expect = 0.13
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 254 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPET 313
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 314 TSTEPPSSSTTPVQTTTTTAPE 335
Score = 37.0 bits (84), Expect = 0.13
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PG 248
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 530 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 589
Query: 247 NSTIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 590 TSTEPPSSSTTPVQTTTTTAPE 611
Score = 37.0 bits (84), Expect = 0.13
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PG 248
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 553 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 612
Query: 247 NSTIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 613 TSTEPPSSSTTPVQTTTTTAPE 634
Score = 37.0 bits (84), Expect = 0.13
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 438 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPET 497
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 498 TSTEPPSSSTTPVQTTTTTAPE 519
Score = 37.0 bits (84), Expect = 0.13
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 369 TTPVQNTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPET 428
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 429 TSTEPPSSSTTPVQTTTTTAPE 450
Score = 37.0 bits (84), Expect = 0.13
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 599 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 658
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 659 TSTEPPSSSTTPVQTTTTTAPE 680
Score = 37.0 bits (84), Expect = 0.13
Identities = 24/82 (29%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q + AP++ + +P + T+ VQ
Sbjct: 93 TTPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPET 152
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 153 TSTEAPSSSTTPVQTTTTTAPE 174
Score = 36.6 bits (83), Expect = 0.17
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 185 TSPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 244
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 245 TSTESPSSSTTPVQTTTTTAPE 266
Score = 36.6 bits (83), Expect = 0.17
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 622 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 681
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 682 TSTEPPSSSNTPVQTTTTTAPE 703
Score = 36.6 bits (83), Expect = 0.17
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PG 248
T V +++ T P+ T T +Q + AP++ +P + TT VQ
Sbjct: 323 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTRTEPPSSSTTPVQNTTTTAPET 382
Query: 247 NSTIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 383 TSTEPPSSSTTPVQTTTTTAPE 404
Score = 36.2 bits (82), Expect = 0.22
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = -2
Query: 397 VTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN-------ST 239
V +++ T P+ T T +Q + AP++ + +P + TT VQ ST
Sbjct: 832 VQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTST 891
Query: 238 IVPGSVPFPSIVTTTSAPE 182
P S P TTT+APE
Sbjct: 892 EPPSSSTTPVQTTTTTAPE 910
Score = 36.2 bits (82), Expect = 0.22
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = -2
Query: 397 VTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PGNST 239
V +++ T P+ T T +Q + AP++ + +P + TT VQ ST
Sbjct: 694 VQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTST 753
Query: 238 IVPGSVPFPSIVTTTSAPE 182
P S P TTT+APE
Sbjct: 754 EPPSSSTTPVQTTTTTAPE 772
Score = 35.8 bits (81), Expect = 0.29
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q AP++ + +P + TT VQ
Sbjct: 277 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPET 336
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 337 TSTEPPSSSTTPVQTTTTTAPE 358
Score = 35.8 bits (81), Expect = 0.29
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q AP++ + +P + TT VQ
Sbjct: 461 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPET 520
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 521 TSTESPSSSTTPVQTTTTTAPE 542
Score = 35.8 bits (81), Expect = 0.29
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PG 248
T V +++ T P+ T T +Q AP++ + +P + TT VQ
Sbjct: 392 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPET 451
Query: 247 NSTIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 452 TSTEPPSSSTTPVQTTTTTAPE 473
Score = 35.8 bits (81), Expect = 0.29
Identities = 24/82 (29%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PG 248
T V +++ T P+ T T +Q + AP++ + +P + T+ VQ
Sbjct: 139 TSPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPET 198
Query: 247 NSTIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 199 TSTEPPSSSTTPVQTTTTTAPE 220
Score = 35.0 bits (79), Expect = 0.49
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q AP++ + +P + TT VQ
Sbjct: 714 TSPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPET 773
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 774 TSTEPPSSSNTPVQTTTTTAPE 795
Score = 35.0 bits (79), Expect = 0.49
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q + AP++ + +P + T VQ
Sbjct: 645 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPET 704
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 705 TSTEPPSSSTSPVQTTTTTAPE 726
Score = 35.0 bits (79), Expect = 0.49
Identities = 25/93 (26%), Positives = 41/93 (43%), Gaps = 7/93 (7%)
Frame = -2
Query: 439 QKSGMDAANVYTIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTD 260
+ + +A + T V +++ T P+ T T +Q + AP++ + + + TT
Sbjct: 105 ETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEAPSSSTTP 164
Query: 259 VQPGN-------STIVPGSVPFPSIVTTTSAPE 182
VQ ST P S P TTT+APE
Sbjct: 165 VQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPE 197
Score = 35.0 bits (79), Expect = 0.49
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PG 248
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 231 TTPVQTTTTTAPETTSTESPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 290
Query: 247 NSTIVPGSVPFPSIVTTTSAPE 182
ST P S P TT +APE
Sbjct: 291 TSTEPPSSSTTPVQTTTITAPE 312
Score = 34.7 bits (78), Expect = 0.64
Identities = 24/82 (29%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGNSTI--- 236
T V +++ T P+ T T +Q + AP++ + +P + TT VQ +T
Sbjct: 300 TTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 359
Query: 235 ----VPGSVPFPSIVTTTSAPE 182
P S P TTT+APE
Sbjct: 360 TRTEPPSSSTTPVQNTTTTAPE 381
Score = 34.3 bits (77), Expect = 0.84
Identities = 24/93 (25%), Positives = 32/93 (33%)
Frame = -2
Query: 460 DSAHVDQQKSGMDAANVYTIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDP 281
++ + S TI ++ T P T Q T S S + P
Sbjct: 473 ETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTTP 532
Query: 280 KKAETTDVQPGNSTIVPGSVPFPSIVTTTSAPE 182
+ TT ST P S P TTT+APE
Sbjct: 533 VQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPE 565
Score = 33.9 bits (76), Expect = 1.1
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PG 248
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 346 TTPVQTTTTTAPETTRTEPPSSSTTPVQNTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 405
Query: 247 NSTIVPGSVPFPSIVTTTSAPE 182
ST P S P TT +APE
Sbjct: 406 TSTEPPSSSTTPVQTTTITAPE 427
Score = 33.9 bits (76), Expect = 1.1
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PG 248
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 415 TTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 474
Query: 247 NSTIVPGSVPFPSIVTTTSAPE 182
ST P S P TT +APE
Sbjct: 475 TSTEPPSSSTTPVQTTTITAPE 496
Score = 33.9 bits (76), Expect = 1.1
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T T +Q + AP++ + + + TT VQ
Sbjct: 208 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTTTAPET 267
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 268 TSTEPPSSSTTPVQTTTTTAPE 289
Score = 33.5 bits (75), Expect = 1.4
Identities = 23/75 (30%), Positives = 29/75 (38%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGNSTIVPG 227
T ++ T P T+ Q T S P S + P + TT ST P
Sbjct: 790 TTTAPETTSTEPPSSSTSPVQTTTITAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPS 849
Query: 226 SVPFPSIVTTTSAPE 182
S P TTT+APE
Sbjct: 850 SSTSPVQTTTTTAPE 864
Score = 33.1 bits (74), Expect = 1.9
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PG 248
T V +++ T P+ T T +Q AP++ + +P + TT VQ
Sbjct: 852 TSPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPET 911
Query: 247 NSTIVPGSVPFPSIVTTTSAPE 182
ST P S P TT +APE
Sbjct: 912 TSTEPPSSSTTPVQTTTITAPE 933
Score = 33.1 bits (74), Expect = 1.9
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN------ 245
T V +++ T P+ T +Q + AP++ + +P + T+ VQ
Sbjct: 760 TTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTITAPET 819
Query: 244 -STIVPGSVPFPSIVTTTSAPE 182
ST P S P TTT+APE
Sbjct: 820 TSTEPPSSSNTPVQTTTTTAPE 841
Score = 32.7 bits (73), Expect = 2.4
Identities = 23/81 (28%), Positives = 35/81 (42%), Gaps = 7/81 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PG 248
T V +++ T P+ T T +Q + AP++ + +P + TT VQ
Sbjct: 875 TTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPET 934
Query: 247 NSTIVPGSVPFPSIVTTTSAP 185
ST P S P TTT+ P
Sbjct: 935 TSTEPPSSSTTPVQTTTTTVP 955
Score = 32.3 bits (72), Expect = 3.2
Identities = 22/79 (27%), Positives = 34/79 (42%), Gaps = 7/79 (8%)
Frame = -2
Query: 397 VTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGN-------ST 239
+ ++ T P+ T T +Q + AP++ + + + TT VQ ST
Sbjct: 73 IKETTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTST 132
Query: 238 IVPGSVPFPSIVTTTSAPE 182
P S P TTT+APE
Sbjct: 133 EPPSSSTSPVQTTTTTAPE 151
Score = 31.2 bits (69), Expect = 7.1
Identities = 22/82 (26%), Positives = 35/82 (41%), Gaps = 7/82 (8%)
Frame = -2
Query: 406 TIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQ-------PG 248
T V +++ T P+ T +Q + AP++ + +P + T+ VQ
Sbjct: 668 TTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPET 727
Query: 247 NSTIVPGSVPFPSIVTTTSAPE 182
ST P S P TT +APE
Sbjct: 728 TSTEPPSSSTTPVQTTTITAPE 749
Score = 30.8 bits (68), Expect = 9.3
Identities = 26/93 (27%), Positives = 42/93 (44%), Gaps = 3/93 (3%)
Frame = -2
Query: 451 HVDQQKS--GMDAANVYTIRVTSSSETVPKQQVTNIH-QLPTPVLQPNVSLAPQSMNVDP 281
H DQ+++ G + R + T+ +T++ + P+ ++ +S P S + P
Sbjct: 17 HFDQERAAIGQKELEIADCRANQTPHTMLPSTLTSVDMETPSTLV---LSSTPTSSST-P 72
Query: 280 KKAETTDVQPGNSTIVPGSVPFPSIVTTTSAPE 182
K TT ST P S P TTT+APE
Sbjct: 73 IKETTTTAPETTSTEPPSSSTTPVQTTTTTAPE 105
>ref|NP_502409.1| Putative nuclear protein, nematode specific [Caenorhabditis
elegans] gi|7505555|pir||T23472 hypothetical protein
K08E7.5 - Caenorhabditis elegans
gi|3878414|emb|CAB01228.1| Hypothetical protein K08E7.5
[Caenorhabditis elegans]
Length = 1221
Score = 35.8 bits (81), Expect = 0.29
Identities = 23/77 (29%), Positives = 34/77 (43%)
Frame = -2
Query: 400 RVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGNSTIVPGSV 221
+ TS T P + T TPV + V ++P S DP K T P V
Sbjct: 70 KTTSKPATTPTPEPTT-----TPVEEEKVKVSPSSSTKDPSKLHKTTKTP---------V 115
Query: 220 PFPSIVTTTSAPEVPTQ 170
+I++TT+AP P++
Sbjct: 116 TITNIISTTTAPPAPSR 132
>ref|NP_476723.1| schnurri CG7734-PA gi|19550117|ref|NP_599106.1| schnurri CG7734-PB
gi|24652613|ref|NP_476724.2| schnurri CG7734-PC
gi|7303660|gb|AAF58712.1| CG7734-PC [Drosophila
melanogaster] gi|7303661|gb|AAF58713.1| CG7734-PB
[Drosophila melanogaster] gi|21627453|gb|AAM68718.1|
CG7734-PA [Drosophila melanogaster]
Length = 2532
Score = 34.7 bits (78), Expect = 0.64
Identities = 41/152 (26%), Positives = 60/152 (38%), Gaps = 3/152 (1%)
Frame = -2
Query: 478 QLHAVSDSAHVDQQKSGMDAANVYTIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQ 299
++H V ++ +S + A V ++ P + LP V QP+V+
Sbjct: 2121 EVHEVKTPEAIESPRSAPEQAPVILAQIAQEENEEPNIAEPHNANLPAAVQQPDVN---- 2176
Query: 298 SMNVDPKKAETTDVQPGNSTIVP-GSVPFPSIVTTTSAPEVP--TQNMAEGK*LTMSCEW 128
E T V GN T P SV S+ TTT+AP P T N + T+
Sbjct: 2177 ---------EFTGVL-GNPTAPPTSSVTATSVSTTTAAPVAPSSTANSTQPAQRTVIVGE 2226
Query: 127 DIIKCSL*TSN*LESYLKHTALVHEVSPAVLS 32
D K S TS L+H + V PA ++
Sbjct: 2227 DGFKSSTPTSK--SGDLQHVSYGRGVPPAPIA 2256
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,302,303
Number of Sequences: 1393205
Number of extensions: 8594275
Number of successful extensions: 27012
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 25664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26877
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
