Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007320A_C01 KMC007320A_c01
(472 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187503.1| putative heat shock protein; protein id: At3g08... 107 5e-23
gb|AAM67147.1| putative heat shock protein [Arabidopsis thaliana] 107 5e-23
ref|NP_195759.1| heat shock protein 40-like; protein id: At5g013... 104 4e-22
gb|AAF05720.1|AF191497_1 DnaJ-like protein [Nicotiana tabacum] 96 2e-19
emb|CAC16088.2| DnaJ like protein [Lycopersicon esculentum] 95 3e-19
>ref|NP_187503.1| putative heat shock protein; protein id: At3g08910.1, supported by
cDNA: 96785. [Arabidopsis thaliana]
gi|6403504|gb|AAF07844.1|AC010871_20 putative heat shock
protein [Arabidopsis thaliana]
Length = 323
Score = 107 bits (268), Expect = 5e-23
Identities = 47/63 (74%), Positives = 60/63 (94%)
Frame = -1
Query: 472 GRNLTVSVNNIISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSRLTSEQKTGIKRL 293
GR++TV +NN+ISP+YEEV+KGEGMPIPK+PSK+GNLRIKF +KFPSRLT+EQK+GIKR+
Sbjct: 260 GRSVTVPINNVISPSYEEVVKGEGMPIPKDPSKKGNLRIKFTVKFPSRLTTEQKSGIKRM 319
Query: 292 LTS 284
+S
Sbjct: 320 FSS 322
>gb|AAM67147.1| putative heat shock protein [Arabidopsis thaliana]
Length = 323
Score = 107 bits (268), Expect = 5e-23
Identities = 47/63 (74%), Positives = 60/63 (94%)
Frame = -1
Query: 472 GRNLTVSVNNIISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSRLTSEQKTGIKRL 293
GR++TV +NN+ISP+YEEV+KGEGMPIPK+PSK+GNLRIKF +KFPSRLT+EQK+GIKR+
Sbjct: 260 GRSVTVPINNVISPSYEEVVKGEGMPIPKDPSKKGNLRIKFTVKFPSRLTTEQKSGIKRM 319
Query: 292 LTS 284
+S
Sbjct: 320 FSS 322
>ref|NP_195759.1| heat shock protein 40-like; protein id: At5g01390.1, supported by
cDNA: 114622. [Arabidopsis thaliana]
gi|11277166|pir||T48161 heat shock protein 40-like -
Arabidopsis thaliana gi|7320717|emb|CAB81922.1| heat
shock protein 40-like [Arabidopsis thaliana]
gi|21536897|gb|AAM61229.1| heat shock protein 40-like
[Arabidopsis thaliana] gi|26453020|dbj|BAC43586.1|
putative heat shock protein 40 [Arabidopsis thaliana]
gi|28973355|gb|AAO64002.1| putative heat shock protein
40 [Arabidopsis thaliana]
Length = 335
Score = 104 bits (260), Expect = 4e-22
Identities = 47/62 (75%), Positives = 59/62 (94%)
Frame = -1
Query: 472 GRNLTVSVNNIISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSRLTSEQKTGIKRL 293
GR LTV VNN+ISP+YEEV+KGEGMPIPK+PS++GNLRI+F IKFPS+LT+EQK+GIKR+
Sbjct: 273 GRTLTVPVNNVISPSYEEVVKGEGMPIPKDPSRKGNLRIRFIIKFPSKLTTEQKSGIKRM 332
Query: 292 LT 287
L+
Sbjct: 333 LS 334
>gb|AAF05720.1|AF191497_1 DnaJ-like protein [Nicotiana tabacum]
Length = 342
Score = 95.9 bits (237), Expect = 2e-19
Identities = 43/63 (68%), Positives = 53/63 (83%)
Frame = -1
Query: 472 GRNLTVSVNNIISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSRLTSEQKTGIKRL 293
GRNLT+ VN++I P YE V+ GEGMP+PK+P+K+GNLRIKF+IKFP RLT+ QK GIK L
Sbjct: 280 GRNLTIPVNSVIQPNYEHVVPGEGMPLPKDPTKKGNLRIKFDIKFPVRLTTTQKAGIKEL 339
Query: 292 LTS 284
L S
Sbjct: 340 LGS 342
>emb|CAC16088.2| DnaJ like protein [Lycopersicon esculentum]
Length = 342
Score = 95.1 bits (235), Expect = 3e-19
Identities = 42/63 (66%), Positives = 53/63 (83%)
Frame = -1
Query: 472 GRNLTVSVNNIISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSRLTSEQKTGIKRL 293
GRNLT+ +NN+I P YE + GEGMP+PK+PSK+GNLRIKF+IKFP+R T QK+GIK+L
Sbjct: 280 GRNLTIPINNVIQPNYEHIAPGEGMPLPKDPSKKGNLRIKFDIKFPARPTVAQKSGIKKL 339
Query: 292 LTS 284
L S
Sbjct: 340 LGS 342
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,078,919
Number of Sequences: 1393205
Number of extensions: 7763310
Number of successful extensions: 20306
Number of sequences better than 10.0: 179
Number of HSP's better than 10.0 without gapping: 19641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20270
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
