Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007312A_C01 KMC007312A_c01
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA07229.2| putative beta-amilase [Cicer arietinum] 371 e-102
gb|AAD38148.1|AF139501_1 beta-amylase [Prunus armeniaca] 358 3e-98
ref|NP_197368.1| glycosyl hydrolase family 14 (beta-amylase); pr... 323 1e-87
gb|AAK85300.1|AF402598_1 putative beta-amylase BMY3 [Arabidopsis... 323 1e-87
dbj|BAC20078.1| putative beta-amylase [Oryza sativa (japonica cu... 248 6e-65
>emb|CAA07229.2| putative beta-amilase [Cicer arietinum]
Length = 314
Score = 371 bits (953), Expect = e-102
Identities = 173/212 (81%), Positives = 191/212 (89%), Gaps = 2/212 (0%)
Frame = +1
Query: 70 FCESFKSSFSAFMGSTITGISMGLGPEGELRYPSHHH--SNGKTQGVGEFQCYDQNMLQL 243
FCESFKSSFS+FM STITGISMGLGP+GELRYPSHH SN KTQG+GEFQCYDQNML
Sbjct: 1 FCESFKSSFSSFMKSTITGISMGLGPDGELRYPSHHDIPSNSKTQGIGEFQCYDQNMLSS 60
Query: 244 LKQHAEASGNPLWGLGGPHDVPTYDQPPHSNNFFKDGGSWESQYGDFFLSWYSNQLITHG 423
LKQHAE+SGNPLWGLGGPHDVPTYDQ P+SN+FFKDGGSWES YGDFFLSWYS+QLI HG
Sbjct: 61 LKQHAESSGNPLWGLGGPHDVPTYDQSPYSNSFFKDGGSWESSYGDFFLSWYSSQLIKHG 120
Query: 424 DCLLSLAASTFGDTGVTIHGKIPLMHTWYGTQSHPSELTAGFYNTANREGYEPVAKIFAK 603
DCLLSLA+STF DTGV+I GKIPLMH+WYGT+S P+ELTAGFYNTA R+GYE VA +FAK
Sbjct: 121 DCLLSLASSTFSDTGVSIFGKIPLMHSWYGTRSRPAELTAGFYNTAKRDGYEQVATMFAK 180
Query: 604 NSCKIMLPGLDLSDANQPSETRSSPXVTSCTT 699
NSCKI+LPG+DLSDANQP+ETRSSP + T
Sbjct: 181 NSCKIILPGMDLSDANQPNETRSSPELLLAQT 212
>gb|AAD38148.1|AF139501_1 beta-amylase [Prunus armeniaca]
Length = 450
Score = 358 bits (920), Expect = 3e-98
Identities = 169/227 (74%), Positives = 196/227 (85%), Gaps = 2/227 (0%)
Frame = +1
Query: 4 LSLAVDNLPVLDGKTPVQVYQSFCESFKSSFSAFMGSTITGISMGLGPEGELRYPSHHHS 183
LSLAVD LPVL+GKTP+QVY FCESFKSSF+ F+GSTITGISM LGP GELRYPSH
Sbjct: 118 LSLAVDELPVLNGKTPIQVYHDFCESFKSSFAPFLGSTITGISMSLGPNGELRYPSHRRL 177
Query: 184 -NGKTQGVGEFQCYDQNMLQLLKQHAEASGNPLWGLGGPHDVPTYDQPPHSNNFFKD-GG 357
K GVGEFQCYD++ML LKQHAEA+GNPLWGLGGPHDVP YDQ P+S+NFFKD GG
Sbjct: 178 VKNKIPGVGEFQCYDESMLSNLKQHAEATGNPLWGLGGPHDVPNYDQSPNSSNFFKDHGG 237
Query: 358 SWESQYGDFFLSWYSNQLITHGDCLLSLAASTFGDTGVTIHGKIPLMHTWYGTQSHPSEL 537
SWES YGDFFLSWYSNQLI+HGD LLSLA+STF D VTI+GK+PL+H+WY T+SH SEL
Sbjct: 238 SWESPYGDFFLSWYSNQLISHGDRLLSLASSTFTDAEVTIYGKVPLIHSWYKTRSHASEL 297
Query: 538 TAGFYNTANREGYEPVAKIFAKNSCKIMLPGLDLSDANQPSETRSSP 678
T+GFYNT++R+GYE VA++FA+NSCKI+LPG+DLSD QP ++ SSP
Sbjct: 298 TSGFYNTSSRDGYEAVAQMFARNSCKIILPGMDLSDERQPQDSLSSP 344
>ref|NP_197368.1| glycosyl hydrolase family 14 (beta-amylase); protein id:
At5g18670.1, supported by cDNA: 30798., supported by
cDNA: gi_15149456, supported by cDNA: gi_17978934
[Arabidopsis thaliana] gi|17978935|gb|AAL47434.1|
AT5g18670/T1A4_50 [Arabidopsis thaliana]
gi|21592648|gb|AAM64597.1| beta-amylase-like proten
[Arabidopsis thaliana] gi|22655358|gb|AAM98271.1|
At5g18670/T1A4_50 [Arabidopsis thaliana]
Length = 536
Score = 323 bits (829), Expect = 1e-87
Identities = 144/225 (64%), Positives = 188/225 (83%)
Frame = +1
Query: 4 LSLAVDNLPVLDGKTPVQVYQSFCESFKSSFSAFMGSTITGISMGLGPEGELRYPSHHHS 183
LS AVD++PVLDGKTP++VY+ FCESFKS+F+ +MG+TITGI++GLGP+GEL+YPSH H
Sbjct: 205 LSFAVDDVPVLDGKTPMEVYRGFCESFKSAFADYMGNTITGITLGLGPDGELKYPSHQH- 263
Query: 184 NGKTQGVGEFQCYDQNMLQLLKQHAEASGNPLWGLGGPHDVPTYDQPPHSNNFFKDGGSW 363
N K G GEFQCYD++ML LK +AE++GNPLWGLGGPHD P YDQ P+S++FF DGGSW
Sbjct: 264 NAKLSGAGEFQCYDKHMLSALKGYAESTGNPLWGLGGPHDAPAYDQQPNSSSFFSDGGSW 323
Query: 364 ESQYGDFFLSWYSNQLITHGDCLLSLAASTFGDTGVTIHGKIPLMHTWYGTQSHPSELTA 543
ESQYGDFFLSWYS+ L +H D +LS+A+S F GV + GK+PL+H W+ +SHPSELTA
Sbjct: 324 ESQYGDFFLSWYSSLLTSHADRVLSVASSAFSGIGVPLCGKLPLLHQWHKLRSHPSELTA 383
Query: 544 GFYNTANREGYEPVAKIFAKNSCKIMLPGLDLSDANQPSETRSSP 678
GFY++ ++ YE +A+IFAKNSC++++PG+DLSD +Q E+ SSP
Sbjct: 384 GFYSSNGQDRYEAIAEIFAKNSCRMIIPGMDLSDEHQSPESLSSP 428
>gb|AAK85300.1|AF402598_1 putative beta-amylase BMY3 [Arabidopsis thaliana]
Length = 537
Score = 323 bits (829), Expect = 1e-87
Identities = 144/225 (64%), Positives = 188/225 (83%)
Frame = +1
Query: 4 LSLAVDNLPVLDGKTPVQVYQSFCESFKSSFSAFMGSTITGISMGLGPEGELRYPSHHHS 183
LS AVD++PVLDGKTP++VY+ FCESFKS+F+ +MG+TITGI++GLGP+GEL+YPSH H
Sbjct: 205 LSFAVDDVPVLDGKTPMEVYRGFCESFKSAFADYMGNTITGITLGLGPDGELKYPSHQH- 263
Query: 184 NGKTQGVGEFQCYDQNMLQLLKQHAEASGNPLWGLGGPHDVPTYDQPPHSNNFFKDGGSW 363
N K G GEFQCYD++ML LK +AE++GNPLWGLGGPHD P YDQ P+S++FF DGGSW
Sbjct: 264 NAKLSGAGEFQCYDKHMLSALKGYAESTGNPLWGLGGPHDAPAYDQQPNSSSFFSDGGSW 323
Query: 364 ESQYGDFFLSWYSNQLITHGDCLLSLAASTFGDTGVTIHGKIPLMHTWYGTQSHPSELTA 543
ESQYGDFFLSWYS+ L +H D +LS+A+S F GV + GK+PL+H W+ +SHPSELTA
Sbjct: 324 ESQYGDFFLSWYSSLLTSHADRVLSVASSAFSGIGVPLCGKLPLLHQWHKLRSHPSELTA 383
Query: 544 GFYNTANREGYEPVAKIFAKNSCKIMLPGLDLSDANQPSETRSSP 678
GFY++ ++ YE +A+IFAKNSC++++PG+DLSD +Q E+ SSP
Sbjct: 384 GFYSSNGQDRYEAIAEIFAKNSCRMIIPGMDLSDEHQSPESLSSP 428
>dbj|BAC20078.1| putative beta-amylase [Oryza sativa (japonica cultivar-group)]
Length = 523
Score = 248 bits (633), Expect = 6e-65
Identities = 117/228 (51%), Positives = 154/228 (67%), Gaps = 3/228 (1%)
Frame = +1
Query: 4 LSLAVDNLPVLDGKTPVQVYQSFCESFKSSFSAFMGSTITGISMGLGPEGELRYPSHHH- 180
LS AVD LPV+ G++P+ Y +F SF +F STIT +++GLGP GELRYPS+
Sbjct: 194 LSFAVDELPVIHGRSPLDCYDAFFRSFADAFQDLFDSTITDVTVGLGPNGELRYPSYPPG 253
Query: 181 SNGKT-QGVGEFQCYDQNMLQLLKQHAEASGNPLWGLGGPHDVPTYDQPPHSNNFFKD-G 354
S+G+ GVGEFQCYD+ ML+ L++HA +G PLWGL GPHD P Y P + FF D G
Sbjct: 254 SDGQGFTGVGEFQCYDRYMLEQLRRHAAEAGEPLWGLSGPHDAPRYGDSPDACGFFNDHG 313
Query: 355 GSWESQYGDFFLSWYSNQLITHGDCLLSLAASTFGDTGVTIHGKIPLMHTWYGTQSHPSE 534
GSW+S YGDFFLSWY+ QL+ HGD +L++A GDT V K+P MH W+G +S P+E
Sbjct: 314 GSWQSAYGDFFLSWYAGQLVGHGDRVLAVANGALGDTPVEASAKVPFMHWWHGARSRPAE 373
Query: 535 LTAGFYNTANREGYEPVAKIFAKNSCKIMLPGLDLSDANQPSETRSSP 678
AGFY + + GY PVAK+FA+ C +++PG+D+ Q T SSP
Sbjct: 374 AVAGFYKSGGKNGYSPVAKMFARRGCTVIVPGMDVCMNKQHRITGSSP 421
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.316 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 670,651,958
Number of Sequences: 1393205
Number of extensions: 15608229
Number of successful extensions: 38171
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 36743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37990
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
