Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007284A_C01 KMC007284A_c01
(472 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ... 56 2e-07
gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza ... 49 3e-05
ref|NP_179352.1| putative non-LTR retroelement reverse transcrip... 48 4e-05
dbj|BAB85312.1| reverse transcriptase -like protein [Oryza sativ... 48 4e-05
gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza ... 45 3e-04
>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 55.8 bits (133), Expect = 2e-07
Identities = 20/48 (41%), Positives = 30/48 (61%)
Frame = +3
Query: 321 NSWWSSI*KAKVSNKVKHFLWKLCHNAIPLKGNLRRRGCATDGKCPIC 464
+ +W + K V K+KHFLW++CHN + L+ NL RG D +C +C
Sbjct: 1244 DDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMC 1291
>gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 48.5 bits (114), Expect = 3e-05
Identities = 21/45 (46%), Positives = 27/45 (59%)
Frame = +3
Query: 330 WSSI*KAKVSNKVKHFLWKLCHNAIPLKGNLRRRGCATDGKCPIC 464
WS + AKV KVK F+WKL + +P N RRR +G CP+C
Sbjct: 957 WSRVWNAKVQAKVKIFIWKLAQDKLPTWENKRRRKIEMNGTCPVC 1001
>ref|NP_179352.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g17610.1 [Arabidopsis thaliana]
gi|25411805|pir||C84554 hypothetical protein At2g17610
[imported] - Arabidopsis thaliana
gi|4926870|gb|AAD32950.1| putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 773
Score = 48.1 bits (113), Expect = 4e-05
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 330 WSSI*KAKVSNKVKHFLWKLCHNAIPLKGNLRRRGCATDGKCPICDQ 470
+++I K K+KHF W+ HNA+P GNL+RR TD C C +
Sbjct: 498 FTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGE 544
>dbj|BAB85312.1| reverse transcriptase -like protein [Oryza sativa (japonica
cultivar-group)] gi|21902088|dbj|BAC05636.1| reverse
transcriptase -like protein [Oryza sativa (japonica
cultivar-group)]
Length = 727
Score = 48.1 bits (113), Expect = 4e-05
Identities = 20/48 (41%), Positives = 29/48 (59%)
Frame = +3
Query: 321 NSWWSSI*KAKVSNKVKHFLWKLCHNAIPLKGNLRRRGCATDGKCPIC 464
N W I + KVK F+W+L HN++PLK N++RR + CP+C
Sbjct: 487 NFEWDKIWSLQCIPKVKQFIWRLAHNSLPLKLNIKRRVPDAETLCPVC 534
>gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza sativa]
Length = 1185
Score = 45.4 bits (106), Expect = 3e-04
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 330 WSSI*KAKVSNKVKHFLWKLCHNAIPLKGNLRRRGCATDGKCPIC 464
W ++ K ++ K+K F W++ H IP KG L + A G CP+C
Sbjct: 860 WDNLWKLEIPPKIKIFAWRMLHGVIPCKGILADKHIAVQGGCPVC 904
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,576,691
Number of Sequences: 1393205
Number of extensions: 8854420
Number of successful extensions: 19432
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 19039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19422
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
