Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007258A_C01 KMC007258A_c01
(357 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB14778.1| unnamed protein product [Homo sapiens] gi|180277... 32 1.6
sp|P10967|ACC3_LYCES 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE H... 31 3.5
ref|NP_713275.1| tRNA-guanine transglycosylase [Leptospira inter... 31 4.5
dbj|BAB29740.1| unnamed protein product [Mus musculus] 30 7.7
>dbj|BAB14778.1| unnamed protein product [Homo sapiens]
gi|18027744|gb|AAL55833.1|AF318326_1 unknown [Homo
sapiens]
Length = 125
Score = 32.3 bits (72), Expect = 1.6
Identities = 16/38 (42%), Positives = 19/38 (49%)
Frame = +1
Query: 190 LRPFKSSQPPPSFFHSLVCLSAPGSSFSEEFPINCPNF 303
LR S QPPPS F CLS P + P++ NF
Sbjct: 85 LRDLSSLQPPPSGFKQFSCLSLPSNWDYRGSPLHLANF 122
>sp|P10967|ACC3_LYCES 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE HOMOLOG (PROTEIN E8)
gi|82109|pir||S01642 ripening protein E8 - tomato
gi|19199|emb|CAA31789.1| E8 protein [Lycopersicon
esculentum]
Length = 363
Score = 31.2 bits (69), Expect = 3.5
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +1
Query: 61 EIPNHHCQSSI-PKLVY*EKNFFHLSNCC---YIQLDLE*KYSGDGNLRPFKSSQPPPSF 228
++ NH +S+ + + + FF N Y D K NL +KSS P S+
Sbjct: 91 QVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASW 150
Query: 229 FHSLVCLSAPGSSFSEEFPINC 294
++ C AP +EFP C
Sbjct: 151 RDTIFCYMAPNPPSLQEFPTPC 172
>ref|NP_713275.1| tRNA-guanine transglycosylase [Leptospira interrogans serovar lai
str. 56601] gi|24196980|gb|AAN50293.1|AE011471_7
tRNA-guanine transglycosylase [Leptospira interrogans
serovar lai str. 56601]
Length = 374
Score = 30.8 bits (68), Expect = 4.5
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = +2
Query: 215 HHHHFFTLWSVSLLQGHHFLKNFQLTAQTSAEQGIFAKV 331
HH T +S+S HF+KNF Q S ++G F ++
Sbjct: 321 HHVGEITAFSLSTYHNLHFMKNFLTEIQNSIQKGEFLEI 359
>dbj|BAB29740.1| unnamed protein product [Mus musculus]
Length = 188
Score = 30.0 bits (66), Expect = 7.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 187 NLRPFKSSQPPPSFFHSLVCLSAPGSSFSEE----FPINCP 297
N RPFK + PPP ++SL+ S S E + NCP
Sbjct: 103 NPRPFKENYPPPRTYYSLIGCSPSAQLSSRERQNTWRENCP 143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299,151,361
Number of Sequences: 1393205
Number of extensions: 5830049
Number of successful extensions: 12220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12213
length of database: 448,689,247
effective HSP length: 94
effective length of database: 317,727,977
effective search space used: 7625471448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
