Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007255A_C01 KMC007255A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188513.1| sugar transport, putative; protein id: At3g1883... 165 3e-40
gb|AAL38359.1| sugar transporter protein [Arabidopsis thaliana] ... 164 5e-40
ref|NP_179210.1| putative sugar transporter; protein id: At2g161... 155 2e-37
gb|AAL14615.1|AF416867_1 putative sugar transporter [Oryza sativa] 155 4e-37
ref|NP_179209.1| putative sugar transporter; protein id: At2g161... 155 4e-37
>ref|NP_188513.1| sugar transport, putative; protein id: At3g18830.1 [Arabidopsis
thaliana] gi|9293909|dbj|BAB01812.1| sugar transporter
protein [Arabidopsis thaliana]
Length = 539
Score = 165 bits (418), Expect = 3e-40
Identities = 81/130 (62%), Positives = 102/130 (78%)
Frame = -2
Query: 555 TVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGCAMGVVVNRVTSGVISMTFLSLSKGIT 376
TV++YVATFSIGAGPITWVYSSEIFPLRLR+QG +MGVVVNRVTSGVIS++FL +SK +T
Sbjct: 401 TVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSSMGVVVNRVTSGVISISFLPMSKAMT 460
Query: 375 IGGAFFLFGGIAICGWIFFYTMLPETRGKTLEDMEGSFGQSKSKIKGNKGVGNGKDNDQA 196
GGAF+LFGGIA W+FFYT LPET+G+ LEDM+ F + + +K GN +
Sbjct: 461 TGGAFYLFGGIATVAWVFFYTFLPETQGRMLEDMDELFSGFRWRDSKSKPKGNPEKTVPN 520
Query: 195 GQVQLGTNVQ 166
+V++G+N Q
Sbjct: 521 PEVEIGSNKQ 530
>gb|AAL38359.1| sugar transporter protein [Arabidopsis thaliana]
gi|20148579|gb|AAM10180.1| sugar transporter protein
[Arabidopsis thaliana]
Length = 245
Score = 164 bits (416), Expect = 5e-40
Identities = 81/130 (62%), Positives = 101/130 (77%)
Frame = -2
Query: 555 TVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGCAMGVVVNRVTSGVISMTFLSLSKGIT 376
TV++YVATFSIGAGPITWVYSSEIFPLRLR+QG +MGVVVNRVTSGVIS++FL +SK +T
Sbjct: 107 TVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSSMGVVVNRVTSGVISISFLPMSKAMT 166
Query: 375 IGGAFFLFGGIAICGWIFFYTMLPETRGKTLEDMEGSFGQSKSKIKGNKGVGNGKDNDQA 196
GGAF+LFGGIA W+FFYT LPET+G+ LEDM+ F + + +K GN +
Sbjct: 167 TGGAFYLFGGIATVAWVFFYTFLPETQGRMLEDMDELFSGFRWRDSKSKPKGNPEKTVPN 226
Query: 195 GQVQLGTNVQ 166
+V++G N Q
Sbjct: 227 PEVEIGLNKQ 236
>ref|NP_179210.1| putative sugar transporter; protein id: At2g16130.1 [Arabidopsis
thaliana] gi|25308959|pir||A84537 probable sugar
transporter [imported] - Arabidopsis thaliana
gi|4678209|gb|AAD26955.1| putative sugar transporter
[Arabidopsis thaliana]
Length = 511
Score = 155 bits (393), Expect = 2e-37
Identities = 73/115 (63%), Positives = 94/115 (81%)
Frame = -2
Query: 555 TVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGCAMGVVVNRVTSGVISMTFLSLSKGIT 376
TV+++VATFS+GAGP+TWVY+SEIFP+RLRAQG ++GV++NR+ SG+I MTFLSLSKG+T
Sbjct: 392 TVMTFVATFSLGAGPVTWVYASEIFPVRLRAQGASLGVMLNRLMSGIIGMTFLSLSKGLT 451
Query: 375 IGGAFFLFGGIAICGWIFFYTMLPETRGKTLEDMEGSFGQSKSKIKGNKGVGNGK 211
IGGAF LF G+A+ W+FF+T LPETRG LE++E FG S S K N + GK
Sbjct: 452 IGGAFLLFAGVAVAAWVFFFTFLPETRGVPLEEIESLFG-SYSANKKNNVMSKGK 505
>gb|AAL14615.1|AF416867_1 putative sugar transporter [Oryza sativa]
Length = 577
Score = 155 bits (391), Expect = 4e-37
Identities = 75/120 (62%), Positives = 92/120 (76%)
Frame = -2
Query: 555 TVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGCAMGVVVNRVTSGVISMTFLSLSKGIT 376
+ L+YVA FSIG GPITWVYSSEIFPL++RA GC++GV NRVTSGVISMTFLSLSK IT
Sbjct: 455 STLAYVAFFSIGLGPITWVYSSEIFPLQVRALGCSLGVAANRVTSGVISMTFLSLSKAIT 514
Query: 375 IGGAFFLFGGIAICGWIFFYTMLPETRGKTLEDMEGSFGQSKSKIKGNKGVGNGKDNDQA 196
IGG+FFL+ GIA W+FFYT LPETRG+TLE+M FG + + + ++ K + A
Sbjct: 515 IGGSFFLYSGIAALAWVFFYTYLPETRGRTLEEMSKLFGDTAAASESDEPAKEKKKVEMA 574
>ref|NP_179209.1| putative sugar transporter; protein id: At2g16120.1 [Arabidopsis
thaliana] gi|25308957|pir||H84536 probable sugar
transporter [imported] - Arabidopsis thaliana
gi|4678208|gb|AAD26954.1| putative sugar transporter
[Arabidopsis thaliana]
Length = 511
Score = 155 bits (391), Expect = 4e-37
Identities = 74/118 (62%), Positives = 92/118 (77%)
Frame = -2
Query: 555 TVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGCAMGVVVNRVTSGVISMTFLSLSKGIT 376
TV+++VATFSIGAGP+TWVY SEIFP+RLRAQG ++GV++NR+ SG+I MTFLSLSKG+T
Sbjct: 392 TVMTFVATFSIGAGPVTWVYCSEIFPVRLRAQGASLGVMLNRLMSGIIGMTFLSLSKGLT 451
Query: 375 IGGAFFLFGGIAICGWIFFYTMLPETRGKTLEDMEGSFGQSKSKIKGNKGVGNGKDND 202
IGGAF LF G+A W+FF+T LPETRG LE+ME FG + K N KDN+
Sbjct: 452 IGGAFLLFAGVAAAAWVFFFTFLPETRGIPLEEMETLFGSYTANKKNN---SMSKDNE 506
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,683,471
Number of Sequences: 1393205
Number of extensions: 11978830
Number of successful extensions: 43911
Number of sequences better than 10.0: 788
Number of HSP's better than 10.0 without gapping: 40699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43406
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
