Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007253A_C01 KMC007253A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL38251.1| dTDP-glucose 4-6-dehydratase-like protein [Arabid... 130 7e-30
ref|NP_190920.1| dTDP-glucose 4-6-dehydratase -like protein; pro... 130 7e-30
dbj|BAB89758.1| P0506B12.30 [Oryza sativa (japonica cultivar-gro... 117 1e-25
dbj|BAB84333.2| UDP-glucuronic acid decarboxylase [Oryza sativa ... 117 1e-25
gb|AAL65400.1| dTDP-glucose 4-6-dehydratase-like protein [Oryza ... 114 7e-25
>gb|AAL38251.1| dTDP-glucose 4-6-dehydratase-like protein [Arabidopsis thaliana]
gi|28058970|gb|AAO29973.1| dTDP-glucose
4-6-dehydratase-like protein [Arabidopsis thaliana]
Length = 435
Score = 130 bits (328), Expect = 7e-30
Identities = 62/74 (83%), Positives = 68/74 (91%)
Frame = -1
Query: 517 MLELAEVVKETIDSSATIEYQPNTADDPHMRKPDITQAKELLNWEPKVPLREGLPLMVSD 338
MLELAEVVKE ID SATIE++PNTADDPH RKPDI++AKE LNWEPK+ LREGLP MVSD
Sbjct: 362 MLELAEVVKEVIDPSATIEFKPNTADDPHKRKPDISKAKEQLNWEPKISLREGLPRMVSD 421
Query: 337 FRNRILNEDEGKGM 296
FRNRILNEDEGKG+
Sbjct: 422 FRNRILNEDEGKGL 435
>ref|NP_190920.1| dTDP-glucose 4-6-dehydratase -like protein; protein id: At3g53520.1
[Arabidopsis thaliana] gi|11270116|pir||T45892
dTDP-glucose 4-6-dehydratase-like protein - Arabidopsis
thaliana gi|6729503|emb|CAB67659.1| dTDP-glucose
4-6-dehydratase-like protein [Arabidopsis thaliana]
gi|14595662|gb|AAK70880.1|AF387787_1 UDP-glucuronic acid
decarboxylase [Arabidopsis thaliana]
Length = 433
Score = 130 bits (328), Expect = 7e-30
Identities = 62/74 (83%), Positives = 68/74 (91%)
Frame = -1
Query: 517 MLELAEVVKETIDSSATIEYQPNTADDPHMRKPDITQAKELLNWEPKVPLREGLPLMVSD 338
MLELAEVVKE ID SATIE++PNTADDPH RKPDI++AKE LNWEPK+ LREGLP MVSD
Sbjct: 360 MLELAEVVKEVIDPSATIEFKPNTADDPHKRKPDISKAKEQLNWEPKISLREGLPRMVSD 419
Query: 337 FRNRILNEDEGKGM 296
FRNRILNEDEGKG+
Sbjct: 420 FRNRILNEDEGKGL 433
>dbj|BAB89758.1| P0506B12.30 [Oryza sativa (japonica cultivar-group)]
Length = 390
Score = 117 bits (292), Expect = 1e-25
Identities = 56/68 (82%), Positives = 61/68 (89%)
Frame = -1
Query: 517 MLELAEVVKETIDSSATIEYQPNTADDPHMRKPDITQAKELLNWEPKVPLREGLPLMVSD 338
MLELA+VVKETID ATIE++PNTADDPHMRKPDIT+AK LL WEPKV LREGLPLMV D
Sbjct: 323 MLELAQVVKETIDPMATIEFKPNTADDPHMRKPDITKAKHLLRWEPKVSLREGLPLMVKD 382
Query: 337 FRNRILNE 314
FR RIL+E
Sbjct: 383 FRQRILDE 390
>dbj|BAB84333.2| UDP-glucuronic acid decarboxylase [Oryza sativa (japonica
cultivar-group)]
Length = 410
Score = 117 bits (292), Expect = 1e-25
Identities = 56/68 (82%), Positives = 61/68 (89%)
Frame = -1
Query: 517 MLELAEVVKETIDSSATIEYQPNTADDPHMRKPDITQAKELLNWEPKVPLREGLPLMVSD 338
MLELA+VVKETID ATIE++PNTADDPHMRKPDIT+AK LL WEPKV LREGLPLMV D
Sbjct: 343 MLELAQVVKETIDPMATIEFKPNTADDPHMRKPDITKAKHLLRWEPKVSLREGLPLMVKD 402
Query: 337 FRNRILNE 314
FR RIL+E
Sbjct: 403 FRQRILDE 410
>gb|AAL65400.1| dTDP-glucose 4-6-dehydratase-like protein [Oryza sativa]
Length = 231
Score = 114 bits (285), Expect = 7e-25
Identities = 53/70 (75%), Positives = 62/70 (87%)
Frame = -1
Query: 517 MLELAEVVKETIDSSATIEYQPNTADDPHMRKPDITQAKELLNWEPKVPLREGLPLMVSD 338
MLELA+VV++TID +A IE++PNTADDPH RKPDIT+AKELL WEPKVPLREGLPLMV+D
Sbjct: 161 MLELAKVVQDTIDPNARIEFRPNTADDPHKRKPDITRAKELLGWEPKVPLREGLPLMVTD 220
Query: 337 FRNRILNEDE 308
FR RI + E
Sbjct: 221 FRKRIFGDQE 230
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,020,067
Number of Sequences: 1393205
Number of extensions: 8716613
Number of successful extensions: 22790
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 22239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22772
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
