Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007250A_C01 KMC007250A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64629.1| COP8 (constitutive photomorphogenic) homolog [Ara... 198 4e-50
ref|NP_199111.1| COP9 complex subunit, FUS4; protein id: At5g429... 198 4e-50
pir||T52302 COP9 signalosome chain COP8 [validated] - Arabidopsi... 197 1e-49
dbj|BAA91555.1| unnamed protein product [Homo sapiens] 128 5e-29
ref|NP_057213.1| COP9 complex subunit 4; likely ortholog of mous... 128 5e-29
>gb|AAM64629.1| COP8 (constitutive photomorphogenic) homolog [Arabidopsis thaliana]
Length = 397
Score = 198 bits (504), Expect = 4e-50
Identities = 97/123 (78%), Positives = 108/123 (86%)
Frame = -1
Query: 583 PEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFDELGTLLGIPPHKA 404
PEIDAF+EEL+PHQKA LPD TVLDRAMIEHNLLSASKLYTNI FDELGTLL I P KA
Sbjct: 275 PEIDAFSEELRPHQKASLPDKSTVLDRAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKA 334
Query: 403 EKIASRMIYEDRMRGSIDQVEAIIHFDDDTEELQRWDQQIVGLCPALNDVLDSLAQKGVP 224
EKIA+ MI +DRMRGSIDQ EA+IHF+DD EELQ+WDQQI GLC ALND+LD +A+KG+
Sbjct: 335 EKIAANMIGQDRMRGSIDQEEAVIHFEDDVEELQQWDQQISGLCQALNDILDGMAKKGMS 394
Query: 223 VPV 215
VPV
Sbjct: 395 VPV 397
>ref|NP_199111.1| COP9 complex subunit, FUS4; protein id: At5g42970.1, supported by
cDNA: 31282., supported by cDNA: gi_18056658, supported
by cDNA: gi_5802626 [Arabidopsis thaliana]
gi|9758586|dbj|BAB09199.1| COP8 (constitutive
photomorphogenic) homolog [Arabidopsis thaliana]
gi|18056659|gb|AAL58103.1|AF395060_1 CSN complex subunit
4 [Arabidopsis thaliana]
Length = 397
Score = 198 bits (504), Expect = 4e-50
Identities = 97/123 (78%), Positives = 108/123 (86%)
Frame = -1
Query: 583 PEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFDELGTLLGIPPHKA 404
PEIDAF+EEL+PHQKA LPD TVLDRAMIEHNLLSASKLYTNI FDELGTLL I P KA
Sbjct: 275 PEIDAFSEELRPHQKASLPDKSTVLDRAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKA 334
Query: 403 EKIASRMIYEDRMRGSIDQVEAIIHFDDDTEELQRWDQQIVGLCPALNDVLDSLAQKGVP 224
EKIA+ MI +DRMRGSIDQ EA+IHF+DD EELQ+WDQQI GLC ALND+LD +A+KG+
Sbjct: 335 EKIAANMIGQDRMRGSIDQEEAVIHFEDDVEELQQWDQQISGLCQALNDILDGMAKKGMS 394
Query: 223 VPV 215
VPV
Sbjct: 395 VPV 397
>pir||T52302 COP9 signalosome chain COP8 [validated] - Arabidopsis thaliana
gi|5802627|gb|AAD51742.1|AF176089_1 COP8 [Arabidopsis
thaliana]
Length = 397
Score = 197 bits (500), Expect = 1e-49
Identities = 96/123 (78%), Positives = 108/123 (87%)
Frame = -1
Query: 583 PEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFDELGTLLGIPPHKA 404
PEIDAF+EEL+PHQKA LPD TVLDRA+IEHNLLSASKLYTNI FDELGTLL I P KA
Sbjct: 275 PEIDAFSEELRPHQKASLPDKSTVLDRAVIEHNLLSASKLYTNIRFDELGTLLAIDPRKA 334
Query: 403 EKIASRMIYEDRMRGSIDQVEAIIHFDDDTEELQRWDQQIVGLCPALNDVLDSLAQKGVP 224
EKIA+ MI +DRMRGSIDQ EA+IHF+DD EELQ+WDQQI GLC ALND+LD +A+KG+
Sbjct: 335 EKIAANMIGQDRMRGSIDQEEAVIHFEDDVEELQQWDQQISGLCQALNDILDGMAKKGMS 394
Query: 223 VPV 215
VPV
Sbjct: 395 VPV 397
>dbj|BAA91555.1| unnamed protein product [Homo sapiens]
Length = 394
Score = 128 bits (322), Expect = 5e-29
Identities = 65/115 (56%), Positives = 84/115 (72%)
Frame = -1
Query: 580 EIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFDELGTLLGIPPHKAE 401
++ FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+F+ELG LL IP KAE
Sbjct: 265 QLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAE 324
Query: 400 KIASRMIYEDRMRGSIDQVEAIIHFDDDTEELQRWDQQIVGLCPALNDVLDSLAQ 236
KIAS+MI E RM G IDQ++ I+HF + E L WD+QI LC +N++L+ ++Q
Sbjct: 325 KIASQMITEGRMNGFIDQIDGIVHF-ETREALPTWDKQIQSLCFQVNNLLEKISQ 378
>ref|NP_057213.1| COP9 complex subunit 4; likely ortholog of mouse COP9 (constitutive
photomorphogenic), subunit 4 (Arabidopsis); COP9
(constitutive photomorphogenic, Arabidopsis, homolog)
subunit 4 [Homo sapiens] gi|5410300|gb|AAD43021.1| COP9
complex subunit 4 [Homo sapiens]
Length = 405
Score = 128 bits (322), Expect = 5e-29
Identities = 65/115 (56%), Positives = 84/115 (72%)
Frame = -1
Query: 580 EIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFDELGTLLGIPPHKAE 401
++ FA L PHQKA D ++LDRA+IEHNLLSASKLY NI+F+ELG LL IP KAE
Sbjct: 276 QLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAE 335
Query: 400 KIASRMIYEDRMRGSIDQVEAIIHFDDDTEELQRWDQQIVGLCPALNDVLDSLAQ 236
KIAS+MI E RM G IDQ++ I+HF + E L WD+QI LC +N++L+ ++Q
Sbjct: 336 KIASQMITEGRMNGFIDQIDGIVHF-ETREALPTWDKQIQSLCFQVNNLLEKISQ 389
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,326,045
Number of Sequences: 1393205
Number of extensions: 10069105
Number of successful extensions: 26850
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 25888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26799
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
