Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007245A_C01 KMC007245A_c01
(750 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB16491.1| P0665D10.16 [Oryza sativa (japonica cultivar-gro... 80 3e-14
ref|NP_175737.1| hypothetical protein; protein id: At1g53300.1 [... 79 7e-14
ref|NP_565976.1| expressed protein; protein id: At2g42580.1, sup... 76 6e-13
gb|AAO41966.1| unknown protein [Arabidopsis thaliana] gi|2882739... 74 2e-12
dbj|BAA97058.1| emb|CAB68200.1~gene_id:K15M2.9~strong similarity... 70 4e-11
>dbj|BAB16491.1| P0665D10.16 [Oryza sativa (japonica cultivar-group)]
gi|21327945|dbj|BAC00538.1| P0489G09.5 [Oryza sativa
(japonica cultivar-group)]
Length = 862
Score = 80.1 bits (196), Expect = 3e-14
Identities = 42/104 (40%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
Frame = -3
Query: 748 GSNLVFISSNDRFRHYVTSPGMSVVLFCNKATQK--QVLLVLEQTCKRFPSVNFLKVEIE 575
G + I+ ++F+ + PG+SV+ F Q+ ++ + C R+PS++FLKV+I
Sbjct: 757 GGEVEAITGMEQFQMATSLPGVSVIHFMTPLNQQCCKISPFVNTLCTRYPSISFLKVDIS 816
Query: 574 DHPYLAKSEGVNSVPSFKIYKNGSRVKEIPGNHHQLLESSVKLY 443
+ P +A++E V +VP+FKIYKNG+RVKE+ QLLE SV+ Y
Sbjct: 817 ESPAVARAENVRTVPTFKIYKNGTRVKEMICPSLQLLEYSVRHY 860
>ref|NP_175737.1| hypothetical protein; protein id: At1g53300.1 [Arabidopsis
thaliana] gi|7769858|gb|AAF69536.1|AC008007_11 F12M16.20
[Arabidopsis thaliana]
Length = 699
Score = 79.0 bits (193), Expect = 7e-14
Identities = 43/105 (40%), Positives = 65/105 (60%), Gaps = 2/105 (1%)
Frame = -3
Query: 748 GSNLVFISSNDRFRHYVTSPGMSVVLFCNKATQ--KQVLLVLEQTCKRFPSVNFLKVEIE 575
G + I S ++F+ + PG+SV+ F + KQ+ ++ C R+PS++FLKV+I+
Sbjct: 594 GGEVEEIYSLEQFKSAMNLPGVSVIHFSTASDHQCKQISPFVDSLCTRYPSIHFLKVDID 653
Query: 574 DHPYLAKSEGVNSVPSFKIYKNGSRVKEIPGNHHQLLESSVKLYS 440
P + +E V VP+ KIYKNGSRVKEI ++LE SV+ YS
Sbjct: 654 KCPSIGNAENVRVVPTVKIYKNGSRVKEIVCPSKEVLEYSVRHYS 698
>ref|NP_565976.1| expressed protein; protein id: At2g42580.1, supported by cDNA:
gi_13605844 [Arabidopsis thaliana]
gi|13605845|gb|AAK32908.1|AF367321_1 At2g42580/F14N22.15
[Arabidopsis thaliana] gi|20198077|gb|AAD22995.2|
expressed protein [Arabidopsis thaliana]
gi|23506041|gb|AAN28880.1| At2g42580/F14N22.15
[Arabidopsis thaliana]
Length = 691
Score = 75.9 bits (185), Expect = 6e-13
Identities = 37/96 (38%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Frame = -3
Query: 730 ISSNDRFRHYVTSPGMSVVLFCNKATQK--QVLLVLEQTCKRFPSVNFLKVEIEDHPYLA 557
+S+ D+F+ V PG+SV F + + ++ ++ + C R+P V+F V++E+ LA
Sbjct: 592 VSTLDKFKKSVALPGVSVFHFKSSSNRQCEEISPFINTLCLRYPLVHFFMVDVEESMALA 651
Query: 556 KSEGVNSVPSFKIYKNGSRVKEIPGNHHQLLESSVK 449
K+E + VP+FK+YKNG +VKE+ HQ LE S+K
Sbjct: 652 KAESIRKVPTFKMYKNGDKVKEMVCPSHQFLEDSIK 687
>gb|AAO41966.1| unknown protein [Arabidopsis thaliana] gi|28827390|gb|AAO50539.1|
unknown protein [Arabidopsis thaliana]
Length = 682
Score = 73.9 bits (180), Expect = 2e-12
Identities = 37/95 (38%), Positives = 60/95 (62%), Gaps = 2/95 (2%)
Frame = -3
Query: 730 ISSNDRFRHYVTSPGMSVVLFCNKATQKQVLL--VLEQTCKRFPSVNFLKVEIEDHPYLA 557
+S+ D+F+ + PG+SV F + + ++ + + C R+P V+F KV++E+ LA
Sbjct: 583 VSTLDKFKTATSLPGISVFHFKSSSNRQSEAISPFVNTLCLRYPLVHFFKVDVEESLALA 642
Query: 556 KSEGVNSVPSFKIYKNGSRVKEIPGNHHQLLESSV 452
K+E + +P+FKIYK G +VKE+ HQLLE SV
Sbjct: 643 KAESIKKIPTFKIYKKGEKVKEMVCPSHQLLEDSV 677
>dbj|BAA97058.1| emb|CAB68200.1~gene_id:K15M2.9~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 705
Score = 69.7 bits (169), Expect = 4e-11
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Frame = -3
Query: 748 GSNLVFISSNDRFRHYVTSPGMSVVLFCNKATQ--KQVLLVLEQTCKRFPSVNFLKVEIE 575
G + ISS + + +T PG+SVV F + K++ ++ C R+PS++FLKVEI
Sbjct: 600 GGEVEEISSLEELKAALTRPGVSVVHFFRASDPQCKEISTFVDALCVRYPSLHFLKVEIV 659
Query: 574 DHPYLAKSEGVNSVPSFKIYKNGSRVKEIPGNHHQLLESSVKLY 443
P + +E V VP+FKIYK G R+KEI + LE +V+ Y
Sbjct: 660 KCPEVGNAERVRVVPTFKIYKLGIRMKEIVCPSKEALEKTVRHY 703
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 674,383,607
Number of Sequences: 1393205
Number of extensions: 15587816
Number of successful extensions: 42367
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 39077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42161
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
