Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007234A_C01 KMC007234A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178182.1| mRNA export protein, putative; protein id: At1g... 47 2e-04
ref|NP_389800.1| similar to two-component sensor histidine kinas... 34 0.86
ref|NP_703708.1| DNA helicase, putative [Plasmodium falciparum 3... 32 5.5
ref|NP_615743.1| conserved hypothetical protein [Methanosarcina ... 32 5.5
dbj|BAB90741.1| putative mRNA export protein [Oryza sativa (japo... 31 7.2
>ref|NP_178182.1| mRNA export protein, putative; protein id: At1g80670.1, supported
by cDNA: 37635. [Arabidopsis thaliana]
gi|25387426|pir||A96839 F23A5.2(form2) [imported] -
Arabidopsis thaliana gi|6503279|gb|AAF14655.1|AC011713_3
F23A5.2(form2) [Arabidopsis thaliana]
gi|21593271|gb|AAM65220.1| mRNA export protein, putative
[Arabidopsis thaliana]
Length = 349
Score = 46.6 bits (109), Expect = 2e-04
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = -2
Query: 510 IFLHLPQESEVKGKPRTGATGRK 442
IFLHLPQESEVK KPR GATGRK
Sbjct: 327 IFLHLPQESEVKAKPRVGATGRK 349
>ref|NP_389800.1| similar to two-component sensor histidine kinase [YocG] [Bacillus
subtilis] gi|7430176|pir||C69901 probable two-component
sensor histidine kinase yocF - Bacillus subtilis
gi|2619013|gb|AAB84437.1| sensor kinase [Bacillus
subtilis] gi|2634312|emb|CAB13811.1| yocF [Bacillus
subtilis subsp. subtilis str. 168]
Length = 370
Score = 34.3 bits (77), Expect = 0.86
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = -1
Query: 283 PFSLLW--GCTFIMIQGYRL-LLFYHMYRFQIMLISFTILVDGFLL 155
PF +W TF++I G L LLF+ +YRF + +TI + GFLL
Sbjct: 26 PFYFIWKSSSTFVIIVGIILTLLFFSVYRFAFVSKGWTIYLWGFLL 71
>ref|NP_703708.1| DNA helicase, putative [Plasmodium falciparum 3D7]
gi|23498369|emb|CAD50320.1| DNA helicase, putative
[Plasmodium falciparum 3D7]
Length = 1712
Score = 31.6 bits (70), Expect = 5.5
Identities = 23/84 (27%), Positives = 38/84 (44%), Gaps = 5/84 (5%)
Frame = -1
Query: 247 IQGYRLLLFYHMYRFQIML-----ISFTILVDGFLLPFEPQPFRRLASSFLDPNVIIICC 83
+Q + FYH+Y I+ I++ ++ +L F+PQ NV+II
Sbjct: 728 LQAISIFYFYHLYPVLIITPASLKINWFSEIEKYLPAFDPQ------------NVLIINS 775
Query: 82 NNDILSCLSFWVILIAKNESNKSL 11
+ND+ C S + I+I K L
Sbjct: 776 SNDMPKCASSYKIIIVSFNIYKKL 799
>ref|NP_615743.1| conserved hypothetical protein [Methanosarcina acetivorans str.
C2A] gi|19914594|gb|AAM04223.1| conserved hypothetical
protein [Methanosarcina acetivorans str. C2A]
Length = 200
Score = 31.6 bits (70), Expect = 5.5
Identities = 20/64 (31%), Positives = 32/64 (49%)
Frame = +2
Query: 146 FERKKESIHQDGERYQHNLESVHVIKE*QPITLNHDKSTPPQKGKGAKPRKKVLDEKPKY 325
F ++ + +H D HN+ S +++KE L +D + P G KP KVL+ K Y
Sbjct: 38 FIKEIKELHADAN---HNV-SAYIVKEGSSFALRYDDNGEPA-GSSGKPVFKVLESKGLY 92
Query: 326 QVAI 337
A+
Sbjct: 93 NAAV 96
>dbj|BAB90741.1| putative mRNA export protein [Oryza sativa (japonica
cultivar-group)]
Length = 344
Score = 31.2 bits (69), Expect = 7.2
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2
Query: 510 IFLHLPQESEVKGKPR 463
IFLH QESEVKGKPR
Sbjct: 325 IFLHSVQESEVKGKPR 340
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,848,265
Number of Sequences: 1393205
Number of extensions: 10130235
Number of successful extensions: 24114
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 23302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24104
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
