Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007232A_C01 KMC007232A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_496776.1| LIM domain containing protein (66.8 kD) [Caenor... 35 0.86
pir||C88346 protein F42G4.3a [imported] - Caenorhabditis elegans 35 0.86
ref|NP_664422.1| putative amidase [Streptococcus pyogenes MGAS31... 34 1.5
dbj|BAC04931.1| unnamed protein product [Homo sapiens] 33 2.5
gb|AAN74660.1| abdominal-A protein [Anomma nigricans] 33 3.3
>ref|NP_496776.1| LIM domain containing protein (66.8 kD) [Caenorhabditis elegans]
gi|7503268|pir||T22111 hypothetical protein F42G4.3a -
Caenorhabditis elegans gi|5824501|emb|CAB03095.2|
Hypothetical protein F42G4.3a [Caenorhabditis elegans]
Length = 603
Score = 34.7 bits (78), Expect = 0.86
Identities = 22/70 (31%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Frame = -3
Query: 553 PSFGFANVSA---SQYSSQHSFALPHASSTSATMLYNSSTTPLSTTSSFGGFVHQDHAGN 383
PSFG +N A S YSS+HS+ S +N++ T +TT+S +++++ N
Sbjct: 176 PSFGNSNSEATYVSPYSSKHSYPTNFRSYHKDDDYFNNTATTATTTTS-SNSLNENNNSN 234
Query: 382 HYHQQEAMLR 353
Y +E +L+
Sbjct: 235 KYGNKETVLQ 244
>pir||C88346 protein F42G4.3a [imported] - Caenorhabditis elegans
Length = 575
Score = 34.7 bits (78), Expect = 0.86
Identities = 22/70 (31%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Frame = -3
Query: 553 PSFGFANVSA---SQYSSQHSFALPHASSTSATMLYNSSTTPLSTTSSFGGFVHQDHAGN 383
PSFG +N A S YSS+HS+ S +N++ T +TT+S +++++ N
Sbjct: 148 PSFGNSNSEATYVSPYSSKHSYPTNFRSYHKDDDYFNNTATTATTTTS-SNSLNENNNSN 206
Query: 382 HYHQQEAMLR 353
Y +E +L+
Sbjct: 207 KYGNKETVLQ 216
>ref|NP_664422.1| putative amidase [Streptococcus pyogenes MGAS315]
gi|28896147|ref|NP_802497.1| putative amidase
[Streptococcus pyogenes SSI-1]
gi|21904347|gb|AAM79225.1| putative amidase
[Streptococcus pyogenes MGAS315]
gi|28811397|dbj|BAC64330.1| putative amidase
[Streptococcus pyogenes SSI-1]
Length = 484
Score = 33.9 bits (76), Expect = 1.5
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = -3
Query: 562 NNEPSFGFANVSASQYSSQHSFALPH-------ASSTSATMLYNSSTTPLSTTSSFGGFV 404
+N P FGF N+S SQ S LPH SS A L +S + L+T S GG +
Sbjct: 115 SNTPEFGFKNISDSQLHGPVS--LPHDNTRNAGGSSGGAAALVSSGISALATASDGGGSI 172
>dbj|BAC04931.1| unnamed protein product [Homo sapiens]
Length = 224
Score = 33.1 bits (74), Expect = 2.5
Identities = 23/64 (35%), Positives = 34/64 (52%)
Frame = -1
Query: 549 LLASPMSVLHSIHHNTPLRSLMHHQHLQPCYITHPQLL*ARPRRLVGLFIKTMLGIIIIS 370
L S MS+L +HH L +L + Q C++ L A+P R VGL ++ M+ I +S
Sbjct: 93 LQPSLMSILDGVHH---LLNLTQTKLAQDCWLC----LKAKPPRYVGLGVEAMIKIDSLS 145
Query: 369 RRLC 358
R C
Sbjct: 146 CRTC 149
>gb|AAN74660.1| abdominal-A protein [Anomma nigricans]
Length = 218
Score = 32.7 bits (73), Expect = 3.3
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = -3
Query: 556 EPSFGFANVSAS--QYSSQHSFALPHASSTSATMLYNSSTTPLSTTSSFGGFVHQDHAGN 383
E S A+V+A+ Y+ QH+ P SS + S++ TTSS +V A +
Sbjct: 38 ESSLSAASVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSAAAAHH 97
Query: 382 HYHQQEAM 359
H+ QQ+A+
Sbjct: 98 HHQQQQAV 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,249,393
Number of Sequences: 1393205
Number of extensions: 9378701
Number of successful extensions: 25236
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25182
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
