Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007212A_C01 KMC007212A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189208.1| protein phosphatase 2A 65 kDa regulatory subuni... 219 1e-56
pir||S51808 phosphoprotein phosphatase 2A 65K regulatory chain h... 219 1e-56
emb|CAB51803.1| phosphatase 2A regulatory A subunit [Oryza sativ... 218 2e-56
gb|AAB60713.1| serine/threonine protein phosphatase type 2A regu... 216 9e-56
pir||S69215 phosphoprotein phosphatase (EC 3.1.3.16) 2A regulato... 216 9e-56
>ref|NP_189208.1| protein phosphatase 2A 65 kDa regulatory subunit; protein id:
At3g25800.1 [Arabidopsis thaliana]
gi|7939566|dbj|BAA95767.1| protein phosphotase 2a 65kd
regulatory subunit [Arabidopsis thaliana]
gi|27311765|gb|AAO00848.1| protein phosphatase 2A 65 kDa
regulatory subunit [Arabidopsis thaliana]
Length = 587
Score = 219 bits (558), Expect = 1e-56
Identities = 109/118 (92%), Positives = 115/118 (97%)
Frame = -1
Query: 356 MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRKLSTIARALGEERTRKELIPFLGENNDDD 177
MSM+DEPLYPIAVLIDELKNDDIQLRLNSIR+LSTIARALGEERTRKELIPFL ENNDDD
Sbjct: 1 MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
Query: 176 DEVLLAMAEELGVFIPFVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGPQMR 3
DEVLLAMAEELGVFIP+VGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+G QMR
Sbjct: 61 DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMR 118
>pir||S51808 phosphoprotein phosphatase 2A 65K regulatory chain homolog pDF1 -
Arabidopsis thaliana gi|683502|emb|CAA57528.1| protein
phosphatase 2A 65 kDa regulatory subunit [Arabidopsis
thaliana]
Length = 587
Score = 219 bits (558), Expect = 1e-56
Identities = 109/118 (92%), Positives = 115/118 (97%)
Frame = -1
Query: 356 MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRKLSTIARALGEERTRKELIPFLGENNDDD 177
MSM+DEPLYPIAVLIDELKNDDIQLRLNSIR+LSTIARALGEERTRKELIPFL ENNDDD
Sbjct: 1 MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
Query: 176 DEVLLAMAEELGVFIPFVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGPQMR 3
DEVLLAMAEELGVFIP+VGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+G QMR
Sbjct: 61 DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMR 118
>emb|CAB51803.1| phosphatase 2A regulatory A subunit [Oryza sativa]
gi|5679686|emb|CAB51804.1| protein phosphatase 2A A
subunit [Oryza sativa]
Length = 587
Score = 218 bits (556), Expect = 2e-56
Identities = 107/118 (90%), Positives = 115/118 (96%)
Frame = -1
Query: 356 MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRKLSTIARALGEERTRKELIPFLGENNDDD 177
M+ +DEPLYPIA+LIDELKN+DIQLRLNSIR+LSTIARALGEERTRKELIPFL ENNDD+
Sbjct: 1 MASMDEPLYPIAILIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDE 60
Query: 176 DEVLLAMAEELGVFIPFVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGPQMR 3
DEVLLAMAEELGVFIP+VGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIG QM+
Sbjct: 61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGAQMK 118
>gb|AAB60713.1| serine/threonine protein phosphatase type 2A regulatory subunit A
Length = 590
Score = 216 bits (551), Expect = 9e-56
Identities = 107/118 (90%), Positives = 115/118 (96%)
Frame = -1
Query: 356 MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRKLSTIARALGEERTRKELIPFLGENNDDD 177
M+MVDEPLYPIAVLIDELKNDDIQLRLNSIR+LSTIARALGEERTRKELIPFL EN+DDD
Sbjct: 1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDD 60
Query: 176 DEVLLAMAEELGVFIPFVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGPQMR 3
DEVLLAMAEELGVFIPFVGG+E AHVLLPPLE+LCTVEETCVR+KAVESLC+IG QM+
Sbjct: 61 DEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMK 118
>pir||S69215 phosphoprotein phosphatase (EC 3.1.3.16) 2A regulatory chain A -
Arabidopsis thaliana
Length = 588
Score = 216 bits (551), Expect = 9e-56
Identities = 107/118 (90%), Positives = 115/118 (96%)
Frame = -1
Query: 356 MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRKLSTIARALGEERTRKELIPFLGENNDDD 177
M+MVDEPLYPIAVLIDELKNDDIQLRLNSIR+LSTIARALGEERTRKELIPFL EN+DDD
Sbjct: 1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDD 60
Query: 176 DEVLLAMAEELGVFIPFVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGPQMR 3
DEVLLAMAEELGVFIPFVGG+E AHVLLPPLE+LCTVEETCVR+KAVESLC+IG QM+
Sbjct: 61 DEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMK 118
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,701,355
Number of Sequences: 1393205
Number of extensions: 10121230
Number of successful extensions: 52322
Number of sequences better than 10.0: 374
Number of HSP's better than 10.0 without gapping: 42646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49958
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
