Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007202A_C01 KMC007202A_c01
(672 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195318.1| hypothetical protein; protein id: At4g35930.1 [... 162 4e-39
ref|NP_176329.1| late embryogenesis abundant protein, putative; ... 57 3e-07
gb|AAO39934.1| At1g61340 [Arabidopsis thaliana] 57 3e-07
pir||T09287 late embryonic abundant protein EMB6 - white spruce ... 56 4e-07
ref|NP_567282.1| hypothetical protein; protein id: At4g05010.1 [... 53 4e-06
>ref|NP_195318.1| hypothetical protein; protein id: At4g35930.1 [Arabidopsis
thaliana] gi|7486393|pir||T04703 hypothetical protein
F4B14.200 - Arabidopsis thaliana
gi|3036797|emb|CAA18487.1| hypothetical protein
[Arabidopsis thaliana] gi|3805859|emb|CAA21479.1|
hypothetical protein [Arabidopsis thaliana]
gi|7270545|emb|CAB81502.1| hypothetical protein
[Arabidopsis thaliana]
Length = 296
Score = 162 bits (410), Expect = 4e-39
Identities = 82/125 (65%), Positives = 98/125 (77%), Gaps = 4/125 (3%)
Frame = -1
Query: 582 IVARQFHFNYTTPDRSRQELLSTMTPRPNDHWPFLCKGDGKGVRVPSPHTPKAPRHGPRP 403
I+ARQ+HFNYTTPDRSRQE+L MTP P + WPF +GDG V SPHTPKAP+H PRP
Sbjct: 172 ILARQYHFNYTTPDRSRQEMLRVMTPVPINRWPFR-RGDGNPTMVSSPHTPKAPKHAPRP 230
Query: 402 PSRLKVSEMRQVAAVLFQ-ESAFPPRCLVPSVIPKP-LCKSLA--STRVLFYEDELCQAV 235
PSR K++EM+Q+ AVLFQ ++ FP RC+VPSV+ +P L K +A RVLFYEDELCQAV
Sbjct: 231 PSRTKLAEMKQITAVLFQDQTPFPSRCIVPSVLQRPTLFKPMAPKHPRVLFYEDELCQAV 290
Query: 234 AQNKL 220
AQN L
Sbjct: 291 AQNNL 295
>ref|NP_176329.1| late embryogenesis abundant protein, putative; protein id:
At1g61340.1 [Arabidopsis thaliana]
gi|26451816|dbj|BAC43001.1| unknown protein [Arabidopsis
thaliana]
Length = 185
Score = 56.6 bits (135), Expect = 3e-07
Identities = 21/46 (45%), Positives = 37/46 (79%)
Frame = -1
Query: 672 MDVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDRS 535
+D+LV+++C + H+ LK +FHVS+ IR+A ++A+Q HF Y+TP ++
Sbjct: 86 LDILVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKT 131
>gb|AAO39934.1| At1g61340 [Arabidopsis thaliana]
Length = 185
Score = 56.6 bits (135), Expect = 3e-07
Identities = 21/46 (45%), Positives = 37/46 (79%)
Frame = -1
Query: 672 MDVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDRS 535
+D+LV+++C + H+ LK +FHVS+ IR+A ++A+Q HF Y+TP ++
Sbjct: 86 LDILVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKT 131
>pir||T09287 late embryonic abundant protein EMB6 - white spruce
gi|1350541|gb|AAB01569.1| late embryogenesis abundant
protein [Picea glauca]
Length = 239
Score = 56.2 bits (134), Expect = 4e-07
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Frame = -1
Query: 672 MDVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDRSRQELLSTMTPRPND 493
+DVLV+++C+L H +L+ + VS+ ++AV VA + HF + TPD R+ S + +
Sbjct: 92 LDVLVEVVCNLGHHELEPLTRVSKDFKQAVKVANETHFGFKTPDPVRRPNRSLFLNQSH- 150
Query: 492 HWPFLCKGDGKGVRVPS--PHTPKAPRHGPRPPSRL-KVSEMRQVAAVLFQESAFPPRC- 325
G PS P TPKAP+ + + L E ++ VLF + P
Sbjct: 151 ------ANSASGSDSPSRWPATPKAPKRVVKHRNLLASDKEFADLSRVLFLDGNQPSGVD 204
Query: 324 LVPSVIPKPLCKSLASTRVLFYEDELCQAVAQN 226
+V + L +A+ R LF DEL A++++
Sbjct: 205 VVDAEHTICLKPGIATNRALFSTDELSGALSRH 237
>ref|NP_567282.1| hypothetical protein; protein id: At4g05010.1 [Arabidopsis
thaliana] gi|25407310|pir||A85063 hypothetical protein
AT4g05010 [imported] - Arabidopsis thaliana
gi|5732077|gb|AAD48976.1|AF162444_8 similar to
Arabidopsis thaliana hypothetical protein GB:AL022603
gi|7267260|emb|CAB81043.1| similarity to similar to
Arabidopsis thaliana hypothetical protein GB:AL022603
Length = 164
Score = 52.8 bits (125), Expect = 4e-06
Identities = 21/44 (47%), Positives = 34/44 (76%)
Frame = -1
Query: 669 DVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDR 538
D+L+++LCH+ H+ L + VS+ IRKAVI A++ HF+Y+TP +
Sbjct: 70 DILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKK 113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 595,869,115
Number of Sequences: 1393205
Number of extensions: 13296400
Number of successful extensions: 39636
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39478
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
