Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007190A_C01 KMC007190A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_010229.1| Monocarboxylate Permease Homologue; Mch1p [Sacc... 32 4.7
>ref|NP_010229.1| Monocarboxylate Permease Homologue; Mch1p [Saccharomyces
cerevisiae] gi|2132421|pir||S67589 probable membrane
protein YDL054c - yeast (Saccharomyces cerevisiae)
gi|1431051|emb|CAA98616.1| ORF YDL054c [Saccharomyces
cerevisiae]
Length = 486
Score = 32.0 bits (71), Expect = 4.7
Identities = 28/95 (29%), Positives = 46/95 (47%)
Frame = -1
Query: 390 SIMLNMFPCELFGILQSPPHLGSLTDADINLSTPTLMVR*VSHHGFDSKFTI*C*MLVGK 211
SI+L++ P E+F ++GSLT+ + L PTL + +S + S FT +L G
Sbjct: 287 SILLSLGPLEMF-----IANMGSLTNLLVQLDAPTLSTKLLSTYALSSTFTR---LLTGI 338
Query: 210 SGC*GFYVSVDVSL*CLLIVVPVRCRIYVCAPFFL 106
F+ +S+ +L+ + VCA FL
Sbjct: 339 VA--DFFAKKKISIKWILLTF---LSLGVCAQLFL 368
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,408,961
Number of Sequences: 1393205
Number of extensions: 9276315
Number of successful extensions: 20263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20241
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
