Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007188A_C01 KMC007188A_c01
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD28640.2| geranylgeranyl hydrogenase [Glycine max] 215 5e-55
emb|CAA07683.1| geranylgeranyl reductase [Nicotiana tabacum] 206 2e-52
ref|NP_177587.1| geranylgeranyl reductase; protein id: At1g74470... 201 7e-51
gb|AAN31803.1| putative geranylgeranyl reductase [Arabidopsis th... 201 7e-51
emb|CAA74372.1| geranylgeranyl reductase [Arabidopsis thaliana] 201 7e-51
>gb|AAD28640.2| geranylgeranyl hydrogenase [Glycine max]
Length = 462
Score = 215 bits (547), Expect = 5e-55
Identities = 100/113 (88%), Positives = 111/113 (97%)
Frame = -1
Query: 670 MCAEAIVEGSENGKRLVEEGDLRKYLEKWDKTYWPTYQVLDVLQKVFYRSDPAREAFVEM 491
MCAEAIVEGSENGKR+VEEGDLRKYLEKWDKTYWPTY+VLD+LQKVFYRS+PAREAFVEM
Sbjct: 350 MCAEAIVEGSENGKRMVEEGDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEM 409
Query: 490 CADEYVQKMTFDSYLYQTVAPGNPLQDIKLAINTLGSLVRAHALKREMEKLNV 332
CADEYVQKMTFDSYLY+TV PGNPL+D+KLAINT+GSLVRA+A++REM KLNV
Sbjct: 410 CADEYVQKMTFDSYLYKTVVPGNPLEDLKLAINTIGSLVRANAIRREMNKLNV 462
>emb|CAA07683.1| geranylgeranyl reductase [Nicotiana tabacum]
Length = 464
Score = 206 bits (524), Expect = 2e-52
Identities = 95/113 (84%), Positives = 110/113 (97%)
Frame = -1
Query: 670 MCAEAIVEGSENGKRLVEEGDLRKYLEKWDKTYWPTYQVLDVLQKVFYRSDPAREAFVEM 491
MCAEAIVEGSE GKR+V+E DLRKYLEKWDKTYWPTY+VLD+LQKVFYRS+PAREAFVEM
Sbjct: 352 MCAEAIVEGSEMGKRMVDESDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEM 411
Query: 490 CADEYVQKMTFDSYLYQTVAPGNPLQDIKLAINTLGSLVRAHALKREMEKLNV 332
CADEYVQKMTFDSYLY+ VAPGNP++D+KLA+NT+GSLVRA+AL+REM+KL+V
Sbjct: 412 CADEYVQKMTFDSYLYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464
>ref|NP_177587.1| geranylgeranyl reductase; protein id: At1g74470.1, supported by
cDNA: gi_15292918, supported by cDNA: gi_15450454,
supported by cDNA: gi_16648980, supported by cDNA:
gi_18700166, supported by cDNA: gi_20259040, supported
by cDNA: gi_20857315 [Arabidopsis thaliana]
gi|25326665|pir||F96773 geranylgeranyl reductase,
47568-49165 [imported] - Arabidopsis thaliana
gi|12324810|gb|AAG52372.1|AC011765_24 geranylgeranyl
reductase; 47568-49165 [Arabidopsis thaliana]
gi|15292919|gb|AAK92830.1| putative geranylgeranyl
reductase [Arabidopsis thaliana]
gi|15450455|gb|AAK96521.1| At1g74470/F1M20_15
[Arabidopsis thaliana] gi|16648981|gb|AAL24342.1|
geranylgeranyl reductase [Arabidopsis thaliana]
gi|18700167|gb|AAL77695.1| At1g74470/F1M20_15
[Arabidopsis thaliana] gi|20259041|gb|AAM14236.1|
putative geranylgeranyl reductase [Arabidopsis thaliana]
gi|20857316|gb|AAM26711.1| At1g74470/F1M20_15
[Arabidopsis thaliana] gi|23397186|gb|AAN31876.1|
putative geranylgeranyl reductase [Arabidopsis thaliana]
gi|27311931|gb|AAO00931.1| geranylgeranyl reductase
[Arabidopsis thaliana]
Length = 467
Score = 201 bits (511), Expect = 7e-51
Identities = 94/113 (83%), Positives = 110/113 (97%)
Frame = -1
Query: 670 MCAEAIVEGSENGKRLVEEGDLRKYLEKWDKTYWPTYQVLDVLQKVFYRSDPAREAFVEM 491
MCAEAIVEGS+NGK++++EGDLRKYLEKWDKTY PTY+VLDVLQKVFYRS+PAREAFVEM
Sbjct: 355 MCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEM 414
Query: 490 CADEYVQKMTFDSYLYQTVAPGNPLQDIKLAINTLGSLVRAHALKREMEKLNV 332
C DEYVQKMTFDSYLY+ VAPG+PL+DIKLA+NT+GSLVRA+AL+RE+EKL+V
Sbjct: 415 CNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467
>gb|AAN31803.1| putative geranylgeranyl reductase [Arabidopsis thaliana]
Length = 467
Score = 201 bits (511), Expect = 7e-51
Identities = 94/113 (83%), Positives = 110/113 (97%)
Frame = -1
Query: 670 MCAEAIVEGSENGKRLVEEGDLRKYLEKWDKTYWPTYQVLDVLQKVFYRSDPAREAFVEM 491
MCAEAIVEGS+NGK++++EGDLRKYLEKWDKTY PTY+VLDVLQKVFYRS+PAREAFVEM
Sbjct: 355 MCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEM 414
Query: 490 CADEYVQKMTFDSYLYQTVAPGNPLQDIKLAINTLGSLVRAHALKREMEKLNV 332
C DEYVQKMTFDSYLY+ VAPG+PL+DIKLA+NT+GSLVRA+AL+RE+EKL+V
Sbjct: 415 CNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467
>emb|CAA74372.1| geranylgeranyl reductase [Arabidopsis thaliana]
Length = 472
Score = 201 bits (511), Expect = 7e-51
Identities = 94/113 (83%), Positives = 110/113 (97%)
Frame = -1
Query: 670 MCAEAIVEGSENGKRLVEEGDLRKYLEKWDKTYWPTYQVLDVLQKVFYRSDPAREAFVEM 491
MCAEAIVEGS+NGK++++EGDLRKYLEKWDKTY PTY+VLDVLQKVFYRS+PAREAFVEM
Sbjct: 360 MCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEM 419
Query: 490 CADEYVQKMTFDSYLYQTVAPGNPLQDIKLAINTLGSLVRAHALKREMEKLNV 332
C DEYVQKMTFDSYLY+ VAPG+PL+DIKLA+NT+GSLVRA+AL+RE+EKL+V
Sbjct: 420 CNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 472
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 614,413,187
Number of Sequences: 1393205
Number of extensions: 14272020
Number of successful extensions: 44871
Number of sequences better than 10.0: 141
Number of HSP's better than 10.0 without gapping: 40809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44241
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
