Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007184A_C01 KMC007184A_c01
(428 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P26011|ITB7_MOUSE Integrin beta-7 precursor (Integrin beta-P)... 32 1.4
gb|AAB23193.1| beta 7 integrin [Mus sp.] 32 1.4
ref|NP_702028.1| hypothetical protein [Plasmodium falciparum 3D7... 32 1.4
ref|NP_038594.1| integrin beta 7 [Mus musculus] gi|349599|gb|AAA... 32 1.4
gb|AAM50967.1| RE08556p [Drosophila melanogaster] 32 2.4
>sp|P26011|ITB7_MOUSE Integrin beta-7 precursor (Integrin beta-P) (M290 IEL antigen)
gi|423482|pir||A46271 integrin beta-7 chain precursor -
mouse gi|198431|gb|AAA39323.1| integrin beta-7 subunit
gi|198433|gb|AAA39324.1| integrin beta-7 subunit
gi|15029918|gb|AAH11184.1| integrin beta 7 [Mus
musculus] gi|26347569|dbj|BAC37433.1| unnamed protein
product [Mus musculus]
Length = 806
Score = 32.3 bits (72), Expect = 1.4
Identities = 19/71 (26%), Positives = 31/71 (42%)
Frame = +1
Query: 124 KLESLQQKLIIQFIKNQACCSFSLLADAYNTVDKEPNRQHSQFPHKVS*SIYTHNKGVKK 303
+L L K + + + L+ DAY+++ +HS P VS S +H KG +K
Sbjct: 358 ELRQLIPKSAVGELSEDSSNVVQLIMDAYDSLSSTVTLEHSPLPPGVSISFESHCKGPEK 417
Query: 304 KHGYLHTKRHC 336
G + C
Sbjct: 418 TEGEAGDRGQC 428
>gb|AAB23193.1| beta 7 integrin [Mus sp.]
Length = 806
Score = 32.3 bits (72), Expect = 1.4
Identities = 19/71 (26%), Positives = 31/71 (42%)
Frame = +1
Query: 124 KLESLQQKLIIQFIKNQACCSFSLLADAYNTVDKEPNRQHSQFPHKVS*SIYTHNKGVKK 303
+L L K + + + L+ DAY+++ +HS P VS S +H KG +K
Sbjct: 358 ELRQLIPKSAVGELSEDSSNVVQLIMDAYDSLSSTVTLEHSPLPPGVSISFESHCKGPEK 417
Query: 304 KHGYLHTKRHC 336
G + C
Sbjct: 418 TEGEAGDRGQC 428
>ref|NP_702028.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497205|gb|AAN36752.1|AE014818_17 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 407
Score = 32.3 bits (72), Expect = 1.4
Identities = 22/69 (31%), Positives = 34/69 (48%)
Frame = +1
Query: 199 ADAYNTVDKEPNRQHSQFPHKVS*SIYTHNKGVKKKHGYLHTKRHCQIPITKRK*Q*EEQ 378
A++ ++ D N +S H V+ T+NK H Y H KR+ Q PI + E++
Sbjct: 216 ANSIDSNDDSNNMDNSNDTHNVNNKDDTNNKYNHVNHNYYHKKRNKQQPILSSN-EPEDK 274
Query: 379 EIQSTKADS 405
I S K +S
Sbjct: 275 YILSKKTES 283
>ref|NP_038594.1| integrin beta 7 [Mus musculus] gi|349599|gb|AAA02749.1| integrin
beta-7 subunit
Length = 805
Score = 32.3 bits (72), Expect = 1.4
Identities = 19/71 (26%), Positives = 31/71 (42%)
Frame = +1
Query: 124 KLESLQQKLIIQFIKNQACCSFSLLADAYNTVDKEPNRQHSQFPHKVS*SIYTHNKGVKK 303
+L L K + + + L+ DAY+++ +HS P VS S +H KG +K
Sbjct: 357 ELRQLIPKSAVGELSEDSSNVVQLIMDAYDSLSSTVTLEHSPLPPGVSISFESHCKGPEK 416
Query: 304 KHGYLHTKRHC 336
G + C
Sbjct: 417 TEGEAGDRGQC 427
>gb|AAM50967.1| RE08556p [Drosophila melanogaster]
Length = 1007
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/57 (38%), Positives = 31/57 (53%), Gaps = 3/57 (5%)
Frame = -3
Query: 306 LLFHPLVVCVNTLADFMRELRMLPVWFFINCI---ISICQ*TKTAACLVLYELYNKL 145
+L+ ++ VNT D +R+L LP F +C+ IS C TK A V+ LYN L
Sbjct: 433 ILYDAILGGVNTARDGLRKLTNLPNGEFESCLQLNISECAFTKDDADNVVVTLYNPL 489
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,967,577
Number of Sequences: 1393205
Number of extensions: 7085412
Number of successful extensions: 19309
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 18646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19291
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
