Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007181A_C01 KMC007181A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67086.1| unknown [Arabidopsis thaliana] 71 8e-12
ref|NP_565678.1| expressed protein; protein id: At2g28910.1, sup... 71 8e-12
gb|AAO17572.1| CAX-interacting protein 4 [Arabidopsis thaliana] 71 8e-12
dbj|BAB17164.1| P0698A04.25 [Oryza sativa (japonica cultivar-gro... 62 3e-09
dbj|BAB61719.1| formin binding protein 11-related protein [Gallu... 59 4e-08
>gb|AAM67086.1| unknown [Arabidopsis thaliana]
Length = 332
Score = 70.9 bits (172), Expect = 8e-12
Identities = 43/93 (46%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Frame = -2
Query: 499 DDSSERRRRKKRREHRRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRS---DSDSETS 329
++ +RRK+RR +R DS S+D+D+ R RKSRKEKRRRRSRR+ DSDSE+S
Sbjct: 222 EEEGRSKRRKERRGRKRDEDDSDESEDEDD-RRVKRKSRKEKRRRRSRRNHSDDSDSESS 280
Query: 328 DDSSTRHKRKSQREKSSSSDTDSSGYNDSQDGQ 230
+D R KR+++ SS S+ + SG + S+ G+
Sbjct: 281 ED-DRRQKRRNKVAASSDSEANVSGDDVSRVGR 312
Score = 47.8 bits (112), Expect = 7e-05
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Frame = -2
Query: 496 DSSERRRR----KKRREHRRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETS 329
DS +R+RR KKR H+R+ L S S+D++E + RK R+ ++R D + S
Sbjct: 194 DSGDRKRRRRSMKKRSSHKRRSL--SESEDEEEGRSKRRKERRGRKR--------DEDDS 243
Query: 328 DDS----STRHKRKSQREK----SSSSDTDSSGYNDSQDGQECK 221
D+S R KRKS++EK S + +D S S+D + K
Sbjct: 244 DESEDEDDRRVKRKSRKEKRRRRSRRNHSDDSDSESSEDDRRQK 287
Score = 45.1 bits (105), Expect = 5e-04
Identities = 26/84 (30%), Positives = 41/84 (47%)
Frame = -2
Query: 454 RRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETSDDSSTRHKRKSQREKSSS 275
++KR+ S D D R+ R+ +KR RRS S+SE D+ R KR+ +R
Sbjct: 181 KKKRVSDESDSDSDSGDRKRRRRSMKKRSSHKRRSLSESE--DEEEGRSKRRKERRGRKR 238
Query: 274 SDTDSSGYNDSQDGQECKEI*KEE 203
+ DS D D + ++ KE+
Sbjct: 239 DEDDSDESEDEDDRRVKRKSRKEK 262
Score = 43.1 bits (100), Expect = 0.002
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = -2
Query: 499 DDSSERRRRKKRREHRRKRLDSSSSDDDDEYTRRHRKSRKEKRRRR-SRRSDSDSETSDD 323
D+ R +RK R+E RR+R + SDD D + R++KRR + + SDS++ S D
Sbjct: 248 DEDDRRVKRKSRKEKRRRRSRRNHSDDSD--SESSEDDRRQKRRNKVAASSDSEANVSGD 305
Query: 322 SSTRHKRKSQR--EKSS 278
+R R S + EK S
Sbjct: 306 DVSRVGRGSSKLSEKKS 322
>ref|NP_565678.1| expressed protein; protein id: At2g28910.1, supported by cDNA:
948., supported by cDNA: gi_16226660 [Arabidopsis
thaliana] gi|25408022|pir||D84690 hypothetical protein
At2g28910 [imported] - Arabidopsis thaliana
gi|3927838|gb|AAC79595.1| expressed protein [Arabidopsis
thaliana] gi|16226661|gb|AAL16226.1|AF428457_1
At2g28910/F8N16.20 [Arabidopsis thaliana]
gi|22655466|gb|AAM98325.1| At2g28910/F8N16.20
[Arabidopsis thaliana]
Length = 332
Score = 70.9 bits (172), Expect = 8e-12
Identities = 43/93 (46%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Frame = -2
Query: 499 DDSSERRRRKKRREHRRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRS---DSDSETS 329
++ +RRK+RR +R DS S+D+D+ R RKSRKEKRRRRSRR+ DSDSE+S
Sbjct: 222 EEEGRSKRRKERRGRKRDEDDSDESEDEDD-RRVKRKSRKEKRRRRSRRNHSDDSDSESS 280
Query: 328 DDSSTRHKRKSQREKSSSSDTDSSGYNDSQDGQ 230
+D R KR+++ SS S+ + SG + S+ G+
Sbjct: 281 ED-DRRQKRRNKVAASSDSEANVSGDDVSRVGR 312
Score = 56.6 bits (135), Expect = 2e-07
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Frame = -2
Query: 496 DSSERRRR----KKRREHRRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETS 329
DS +R+RR KKR H+R+ L S S+D++E R R+++RR R R D E+
Sbjct: 194 DSGDRKRRRRSMKKRSSHKRRSL--SESEDEEE----GRSKRRKERRGRKRDEDDSDESE 247
Query: 328 DDSSTRHKRKSQREK----SSSSDTDSSGYNDSQDGQECK 221
D+ R KRKS++EK S + +D S S+D + K
Sbjct: 248 DEDDRRVKRKSRKEKRRRRSRRNHSDDSDSESSEDDRRQK 287
Score = 45.1 bits (105), Expect = 5e-04
Identities = 26/84 (30%), Positives = 41/84 (47%)
Frame = -2
Query: 454 RRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETSDDSSTRHKRKSQREKSSS 275
++KR+ S D D R+ R+ +KR RRS S+SE D+ R KR+ +R
Sbjct: 181 KKKRVSDESDSDSDSGDRKRRRRSMKKRSSHKRRSLSESE--DEEEGRSKRRKERRGRKR 238
Query: 274 SDTDSSGYNDSQDGQECKEI*KEE 203
+ DS D D + ++ KE+
Sbjct: 239 DEDDSDESEDEDDRRVKRKSRKEK 262
Score = 41.6 bits (96), Expect = 0.005
Identities = 20/76 (26%), Positives = 38/76 (49%)
Frame = -2
Query: 499 DDSSERRRRKKRREHRRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETSDDS 320
+D +RR ++K R+ +R+R + DD + R+++R + + SDS++ S D
Sbjct: 247 EDEDDRRVKRKSRKEKRRRRSRRNHSDDSDSESSEDDRRQKRRNKVAASSDSEANVSGDD 306
Query: 319 STRHKRKSQREKSSSS 272
+R R S + S
Sbjct: 307 VSRVGRGSSKRSEKKS 322
>gb|AAO17572.1| CAX-interacting protein 4 [Arabidopsis thaliana]
Length = 332
Score = 70.9 bits (172), Expect = 8e-12
Identities = 43/93 (46%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Frame = -2
Query: 499 DDSSERRRRKKRREHRRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRS---DSDSETS 329
++ +RRK+RR +R DS S+D+D+ R RKSRKEKRRRRSRR+ DSDSE+S
Sbjct: 222 EEEGRSKRRKERRGRKRDEDDSDESEDEDD-RRVKRKSRKEKRRRRSRRNHSDDSDSESS 280
Query: 328 DDSSTRHKRKSQREKSSSSDTDSSGYNDSQDGQ 230
+D R KR+++ SS S+ + SG + S+ G+
Sbjct: 281 ED-DRRQKRRNKVAASSDSEANVSGDDVSRVGR 312
Score = 56.6 bits (135), Expect = 2e-07
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Frame = -2
Query: 496 DSSERRRR----KKRREHRRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETS 329
DS +R+RR KKR H+R+ L S S+D++E R R+++RR R R D E+
Sbjct: 194 DSGDRKRRRRSMKKRSSHKRRSL--SESEDEEE----GRSKRRKERRGRKRDEDDSDESE 247
Query: 328 DDSSTRHKRKSQREK----SSSSDTDSSGYNDSQDGQECK 221
D+ R KRKS++EK S + +D S S+D + K
Sbjct: 248 DEDDRRVKRKSRKEKRRRRSRRNHSDDSDSESSEDDRRQK 287
Score = 45.1 bits (105), Expect = 5e-04
Identities = 26/84 (30%), Positives = 41/84 (47%)
Frame = -2
Query: 454 RRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETSDDSSTRHKRKSQREKSSS 275
++KR+ S D D R+ R+ +KR RRS S+SE D+ R KR+ +R
Sbjct: 181 KKKRVSDESDSDSDSGDRKRRRRSMKKRSSHKRRSLSESE--DEEEGRSKRRKERRGRKR 238
Query: 274 SDTDSSGYNDSQDGQECKEI*KEE 203
+ DS D D + ++ KE+
Sbjct: 239 DEDDSDESEDEDDRRVKRKSRKEK 262
Score = 41.6 bits (96), Expect = 0.005
Identities = 20/76 (26%), Positives = 38/76 (49%)
Frame = -2
Query: 499 DDSSERRRRKKRREHRRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETSDDS 320
+D +RR ++K R+ +R+R + DD + R+++R + + SDS++ S D
Sbjct: 247 EDEDDRRVKRKSRKEKRRRRSRRNHSDDSDSESSEDDRRQKRRNKVAASSDSEANVSGDD 306
Query: 319 STRHKRKSQREKSSSS 272
+R R S + S
Sbjct: 307 VSRVGRGSSKRSEKKS 322
>dbj|BAB17164.1| P0698A04.25 [Oryza sativa (japonica cultivar-group)]
gi|12697612|dbj|BAB07941.2| P0684C01.2 [Oryza sativa
(japonica cultivar-group)]
Length = 285
Score = 62.4 bits (150), Expect = 3e-09
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Frame = -2
Query: 496 DSSERRRRKKRREHRRKRLDS--SSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETSDD 323
D+ + ++ K R+HRR+ S S SD D + R+HRK + KR R+ SDS D
Sbjct: 40 DAEAKEKKLKSRKHRRRGHSSSDSESDSDSDGDRKHRKRKDRKRHRKHGHSDS------D 93
Query: 322 SSTRHKRKSQREKS-SSSDTDSSGYNDSQD 236
+ RHKR+S+R S SS DTDS Y+ +
Sbjct: 94 EAKRHKRRSKRRSSDSSDDTDSDEYDSGSE 123
Score = 55.8 bits (133), Expect = 3e-07
Identities = 39/103 (37%), Positives = 55/103 (52%), Gaps = 13/103 (12%)
Frame = -2
Query: 496 DSSERRRRKKRREHRRKRLDSSSSDDDDEY-------TRRHRKSRKEKRRRRSRRSDSDS 338
DS E +R K+R +R+ DSS D DEY RR ++S + K RR S RSDSD+
Sbjct: 91 DSDEAKRHKRRS--KRRSSDSSDDTDSDEYDSGSEEENRRKKRSHRRKHRRHSSRSDSDA 148
Query: 337 ETSDDSSTRHKRKSQREKSSSSDTD------SSGYNDSQDGQE 227
SD SS +R+S ++ SSS + SSG + + +E
Sbjct: 149 --SDYSSDDEERRSSKKDHSSSRSHRHHHHRSSGDDSGSESEE 189
Score = 50.8 bits (120), Expect = 8e-06
Identities = 36/106 (33%), Positives = 55/106 (50%), Gaps = 7/106 (6%)
Frame = -2
Query: 496 DSSERRRRKKRREHRRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETSDDSS 317
DS R+ +KR++ +R R S D+ +RH+ R+ KRR D+DS+ D S
Sbjct: 68 DSDGDRKHRKRKDRKRHRKHGHSDSDE---AKRHK--RRSKRRSSDSSDDTDSDEYDSGS 122
Query: 316 ---TRHKRKSQREK----SSSSDTDSSGYNDSQDGQECKEI*KEET 200
R K++S R K SS SD+D+S Y S D +E + K+ +
Sbjct: 123 EEENRRKKRSHRRKHRRHSSRSDSDASDY--SSDDEERRSSKKDHS 166
Score = 47.0 bits (110), Expect = 1e-04
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 14/108 (12%)
Frame = -2
Query: 499 DDSSERRRRKKRREHRRK------RLDSS----SSDDDDEYTRR--HRKSRKEK-RRRRS 359
D SE R+K+R HRRK R DS SSDD++ + + H SR + RS
Sbjct: 119 DSGSEEENRRKKRSHRRKHRRHSSRSDSDASDYSSDDEERRSSKKDHSSSRSHRHHHHRS 178
Query: 358 RRSDSDSETSDDSSTRHKRKSQ-REKSSSSDTDSSGYNDSQDGQECKE 218
DS SE+ + +RHK+ + ++ ++SD+++ + S+ +E +
Sbjct: 179 SGDDSGSESEERGRSRHKKHHRSSDEDATSDSNNHKHRRSRSLEESSD 226
Score = 42.0 bits (97), Expect = 0.004
Identities = 29/93 (31%), Positives = 41/93 (43%), Gaps = 4/93 (4%)
Frame = -2
Query: 496 DSSERRRRKK----RREHRRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETS 329
D ERR KK R HR SS D E R R R ++ RS + TS
Sbjct: 154 DDEERRSSKKDHSSSRSHRHHHHRSSGDDSGSESEERGR-----SRHKKHHRSSDEDATS 208
Query: 328 DDSSTRHKRKSQREKSSSSDTDSSGYNDSQDGQ 230
D ++ +H+R E+ SS D + Y ++G+
Sbjct: 209 DSNNHKHRRSRSLEE-SSDDAAAGEYEKVRNGK 240
>dbj|BAB61719.1| formin binding protein 11-related protein [Gallus gallus]
Length = 853
Score = 58.5 bits (140), Expect = 4e-08
Identities = 31/83 (37%), Positives = 50/83 (59%), Gaps = 3/83 (3%)
Frame = -2
Query: 493 SSERRRRKKRREHRRKRLDS---SSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETSDD 323
S ++ KK ++H RKR S S S+DDD ++++ R+ R E R R S ++SE S
Sbjct: 749 SKNKKHSKKSKKHHRKRSRSRSGSESEDDDSHSKKKRQ-RSESRSASERSSSAESERSYK 807
Query: 322 SSTRHKRKSQREKSSSSDTDSSG 254
S +HK+KS++ + S + D+SG
Sbjct: 808 KSKKHKKKSKKRRHKSGNWDTSG 830
Score = 37.4 bits (85), Expect = 0.096
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = -2
Query: 403 RRHRKSRKEKRRRRSRRSDSDSETSDDSSTRHKRKSQREKSSSSDTDSSGYNDSQDGQEC 224
++H K K+ R+RSR S S SE+ DD S K+K QR +S S+ SS + ++
Sbjct: 752 KKHSKKSKKHHRKRSR-SRSGSESEDDDS-HSKKKRQRSESRSASERSSSAESERSYKKS 809
Query: 223 KE 218
K+
Sbjct: 810 KK 811
Score = 35.0 bits (79), Expect = 0.47
Identities = 16/58 (27%), Positives = 35/58 (59%)
Frame = -2
Query: 499 DDSSERRRRKKRREHRRKRLDSSSSDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETSD 326
DD S +++++R E R SSS++ + Y ++ +K +K+ ++RR + + D+ S+
Sbjct: 776 DDDSHSKKKRQRSESRSASERSSSAESERSY-KKSKKHKKKSKKRRHKSGNWDTSGSE 832
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,699,326
Number of Sequences: 1393205
Number of extensions: 10240520
Number of successful extensions: 127716
Number of sequences better than 10.0: 3669
Number of HSP's better than 10.0 without gapping: 63231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109575
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
