Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007167A_C01 KMC007167A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194807.1| putative protein; protein id: At4g30780.1 [Arab... 71 1e-11
pir||F84632 hypothetical protein At2g24100 [imported] - Arabidop... 67 2e-10
ref|NP_565562.1| expressed protein; protein id: At2g24100.1 [Ara... 67 2e-10
sp|Q07162|PRTG_ERWCH Secreted protease G precursor (ProG) gi|107... 34 1.6
ref|XP_051005.1| KIAA1297 protein [Homo sapiens] 33 3.6
>ref|NP_194807.1| putative protein; protein id: At4g30780.1 [Arabidopsis thaliana]
gi|25407680|pir||C85360 hypothetical protein AT4g30780
[imported] - Arabidopsis thaliana
gi|5725442|emb|CAB52451.1| putative protein [Arabidopsis
thaliana] gi|7269979|emb|CAB79796.1| putative protein
[Arabidopsis thaliana] gi|28393759|gb|AAO42289.1|
unknown protein [Arabidopsis thaliana]
gi|28973227|gb|AAO63938.1| unknown protein [Arabidopsis
thaliana]
Length = 589
Score = 70.9 bits (172), Expect = 1e-11
Identities = 35/47 (74%), Positives = 38/47 (80%)
Frame = -3
Query: 530 DTSGGKQGLGMSRKDSFSDLLLHLPRITSLPKFLFNISEEDGDSQAR 390
DT+ + GM RKDSFSDLLLHLPRITSLPKFL NISEEDGD+ R
Sbjct: 543 DTASSSKPQGMLRKDSFSDLLLHLPRITSLPKFLSNISEEDGDAYNR 589
>pir||F84632 hypothetical protein At2g24100 [imported] - Arabidopsis thaliana
gi|14596217|gb|AAK68836.1| Unknown protein [Arabidopsis
thaliana] gi|15809913|gb|AAL06884.1| At2g24100/F27D4.1
[Arabidopsis thaliana]
Length = 466
Score = 66.6 bits (161), Expect = 2e-10
Identities = 33/39 (84%), Positives = 34/39 (86%)
Frame = -3
Query: 524 SGGKQGLGMSRKDSFSDLLLHLPRITSLPKFLFNISEED 408
S K GMSRKDSFSDLL+HLPRITSLPKFLFNISEED
Sbjct: 428 SSSKPLQGMSRKDSFSDLLVHLPRITSLPKFLFNISEED 466
>ref|NP_565562.1| expressed protein; protein id: At2g24100.1 [Arabidopsis thaliana]
gi|20197500|gb|AAD03372.2| expressed protein
[Arabidopsis thaliana]
Length = 463
Score = 66.6 bits (161), Expect = 2e-10
Identities = 33/39 (84%), Positives = 34/39 (86%)
Frame = -3
Query: 524 SGGKQGLGMSRKDSFSDLLLHLPRITSLPKFLFNISEED 408
S K GMSRKDSFSDLL+HLPRITSLPKFLFNISEED
Sbjct: 425 SSSKPLQGMSRKDSFSDLLVHLPRITSLPKFLFNISEED 463
>sp|Q07162|PRTG_ERWCH Secreted protease G precursor (ProG) gi|1073289|pir||S48132
metalloproteinase G (EC 3.4.24.-) - Erwinia chrysanthemi
gi|297861|emb|CAA50501.1| protease G [Erwinia
chrysanthemi]
Length = 475
Score = 33.9 bits (76), Expect = 1.6
Identities = 21/66 (31%), Positives = 30/66 (44%)
Frame = +2
Query: 137 NYIQADNNRPRVLHKGKEIKQIELKHLLSNLYTGSTRILH*NNFSKSQGSPK*NNLAHVY 316
NY QADN RP + G+ E+ H L + H ++ S G+P Y
Sbjct: 165 NYNQADNQRPDINEFGRNTLTHEIGHTLG--------LYHPGDYDASDGNPG-------Y 209
Query: 317 KDITYS 334
KD+TY+
Sbjct: 210 KDVTYA 215
>ref|XP_051005.1| KIAA1297 protein [Homo sapiens]
Length = 281
Score = 32.7 bits (73), Expect = 3.6
Identities = 15/31 (48%), Positives = 19/31 (60%)
Frame = +1
Query: 124 PGTHELHTSRQQPSTSPTQRQGDKTNRAKTP 216
PG HEL +RQ+P+TSP R G A +P
Sbjct: 146 PGWHELPPARQRPTTSPHSRTGACKRAAASP 176
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,131,686
Number of Sequences: 1393205
Number of extensions: 11410485
Number of successful extensions: 33210
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 32067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33181
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
