Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007166A_C01 KMC007166A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK00450.1|AC060755_20 unknown protein [Oryza sativa] 116 2e-25
pir||T05075 hypothetical protein T6K21.70 - Arabidopsis thaliana... 111 7e-24
ref|NP_567543.1| Expressed protein; protein id: At4g17890.1 [Ara... 111 7e-24
gb|AAK25887.1|AF360177_1 unknown protein [Arabidopsis thaliana] 111 7e-24
gb|AAO66537.1| putative zinc finger protein [Oryza sativa (japon... 108 8e-23
>gb|AAK00450.1|AC060755_20 unknown protein [Oryza sativa]
Length = 407
Score = 116 bits (291), Expect = 2e-25
Identities = 61/88 (69%), Positives = 75/88 (84%), Gaps = 1/88 (1%)
Frame = -2
Query: 630 FGDQSKADVEAKATLSKFSGSNAISSADLFGDSGDNS-IDLSASDLINRLSFQAQQDISS 454
FGDQ+ + EA+ +L KFSGS+AISSADLFG ++S +DLSASDLINRLSFQA QD+SS
Sbjct: 320 FGDQASFEKEAQVSLQKFSGSSAISSADLFGHPTNSSNVDLSASDLINRLSFQASQDLSS 379
Query: 453 LKNIAGETGKKLSSLASTLMTDFGDRIL 370
+KN+AGETGKKL+SLAS +M+D DRIL
Sbjct: 380 IKNMAGETGKKLTSLASNIMSDLQDRIL 407
>pir||T05075 hypothetical protein T6K21.70 - Arabidopsis thaliana
gi|2894598|emb|CAA17132.1| putative protein [Arabidopsis
thaliana] gi|7268541|emb|CAB78791.1| putative protein
[Arabidopsis thaliana]
Length = 1082
Score = 111 bits (278), Expect = 7e-24
Identities = 60/89 (67%), Positives = 75/89 (83%), Gaps = 2/89 (2%)
Frame = -2
Query: 630 FGDQSK-ADVEAKATLSKFSGSNAISSADLFG-DSGDNSIDLSASDLINRLSFQAQQDIS 457
FGDQ+K AD+E+KATL KF+GS +ISSAD +G D D++ID++ASDLINRLSFQAQQD+S
Sbjct: 325 FGDQNKNADLESKATLQKFAGSASISSADFYGHDQDDSNIDITASDLINRLSFQAQQDLS 384
Query: 456 SLKNIAGETGKKLSSLASTLMTDFGDRIL 370
SL NIAGET KKL +LAS + +D DR+L
Sbjct: 385 SLVNIAGETKKKLGTLASGIFSDIQDRML 413
>ref|NP_567543.1| Expressed protein; protein id: At4g17890.1 [Arabidopsis thaliana]
gi|24030421|gb|AAN41368.1| unknown protein [Arabidopsis
thaliana]
Length = 413
Score = 111 bits (278), Expect = 7e-24
Identities = 60/89 (67%), Positives = 75/89 (83%), Gaps = 2/89 (2%)
Frame = -2
Query: 630 FGDQSK-ADVEAKATLSKFSGSNAISSADLFG-DSGDNSIDLSASDLINRLSFQAQQDIS 457
FGDQ+K AD+E+KATL KF+GS +ISSAD +G D D++ID++ASDLINRLSFQAQQD+S
Sbjct: 325 FGDQNKNADLESKATLQKFAGSASISSADFYGHDQDDSNIDITASDLINRLSFQAQQDLS 384
Query: 456 SLKNIAGETGKKLSSLASTLMTDFGDRIL 370
SL NIAGET KKL +LAS + +D DR+L
Sbjct: 385 SLVNIAGETKKKLGTLASGIFSDIQDRML 413
>gb|AAK25887.1|AF360177_1 unknown protein [Arabidopsis thaliana]
Length = 413
Score = 111 bits (278), Expect = 7e-24
Identities = 60/89 (67%), Positives = 75/89 (83%), Gaps = 2/89 (2%)
Frame = -2
Query: 630 FGDQSK-ADVEAKATLSKFSGSNAISSADLFG-DSGDNSIDLSASDLINRLSFQAQQDIS 457
FGDQ+K AD+E+KATL KF+GS +ISSAD +G D D++ID++ASDLINRLSFQAQQD+S
Sbjct: 325 FGDQNKNADLESKATLQKFAGSASISSADFYGHDQDDSNIDITASDLINRLSFQAQQDLS 384
Query: 456 SLKNIAGETGKKLSSLASTLMTDFGDRIL 370
SL NIAGET KKL +LAS + +D DR+L
Sbjct: 385 SLVNIAGETKKKLGTLASGIFSDIQDRML 413
>gb|AAO66537.1| putative zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 412
Score = 108 bits (269), Expect = 8e-23
Identities = 56/89 (62%), Positives = 76/89 (84%), Gaps = 2/89 (2%)
Frame = -2
Query: 630 FGDQSKADVEAKATLSKFSGSNAISSADLFG--DSGDNSIDLSASDLINRLSFQAQQDIS 457
FG+QS+ + +A+ +L KF+GS++ISSADLFG D D+++DLSA+DLINR+SFQA QD+S
Sbjct: 325 FGNQSREEKDAQMSLQKFAGSSSISSADLFGRRDMDDSNLDLSAADLINRISFQASQDLS 384
Query: 456 SLKNIAGETGKKLSSLASTLMTDFGDRIL 370
SLKN+AGETGKKL+S+AS ++D DRIL
Sbjct: 385 SLKNMAGETGKKLTSIASNFISDL-DRIL 412
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,339,183
Number of Sequences: 1393205
Number of extensions: 10149169
Number of successful extensions: 26453
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 25448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26409
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
