Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007165A_C02 KMC007165A_c02
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176944.1| F12A21.9; protein id: At1g67780.1 [Arabidopsis ... 61 7e-09
ref|NP_176895.1| hypothetical protein; protein id: At1g67270.1 [... 58 8e-08
gb|AAG00254.1|AC002130_19 F1N21.9 [Arabidopsis thaliana] 58 8e-08
dbj|BAB10159.1| gb|AAF26952.1~gene_id:MBB18.24~strong similarity... 50 1e-05
ref|NP_198685.2| putative protein; protein id: At5g38690.1, supp... 50 1e-05
>ref|NP_176944.1| F12A21.9; protein id: At1g67780.1 [Arabidopsis thaliana]
gi|25404967|pir||F96700 protein F12A21.9 [imported] -
Arabidopsis thaliana
gi|11072030|gb|AAG28909.1|AC008113_25 F12A21.9
[Arabidopsis thaliana]
Length = 515
Score = 61.2 bits (147), Expect = 7e-09
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = -2
Query: 523 LKLLTTEVAQAHSEMLEAKEKIP-KRKISDATRIEPHFV-DGRKVFWKFKCFEGEDTLLL 350
L + E +AH M+EAK +I DA R EP V D V WK C++ E LL
Sbjct: 408 LSQIRAEAKEAHDGMMEAKGITSGMTRICDARRTEPIMVEDNGLVLWKLNCYDEEPKFLL 467
Query: 349 QDIKVQEGDGTAATDERWFFYGPEKKNDIDKYISSRAKR 233
QD+ +G + E+W + PE+K DI+ YIS + ++
Sbjct: 468 QDLGTFDG---LCSHEKWLAFKPEQKPDIENYISYKRRK 503
>ref|NP_176895.1| hypothetical protein; protein id: At1g67270.1 [Arabidopsis
thaliana]
Length = 506
Score = 57.8 bits (138), Expect = 8e-08
Identities = 37/92 (40%), Positives = 46/92 (49%), Gaps = 2/92 (2%)
Frame = -2
Query: 505 EVAQAHSEMLEAKEKIPKRK-ISDATRIEPHFVDGRK-VFWKFKCFEGEDTLLLQDIKVQ 332
E +AH EM+EAK K I DA R EP +D V WK KCFE E LLQD+
Sbjct: 415 EAKEAHEEMMEAKGMKSKMTLICDARRTEPIMLDDNGFVLWKLKCFEEEQFFLLQDLGTF 474
Query: 331 EGDGTAATDERWFFYGPEKKNDIDKYISSRAK 236
+ ERW + PE+K +I+ R K
Sbjct: 475 D---DLCPHERWLAFKPEQKPEIENISLVRGK 503
>gb|AAG00254.1|AC002130_19 F1N21.9 [Arabidopsis thaliana]
Length = 495
Score = 57.8 bits (138), Expect = 8e-08
Identities = 37/92 (40%), Positives = 46/92 (49%), Gaps = 2/92 (2%)
Frame = -2
Query: 505 EVAQAHSEMLEAKEKIPKRK-ISDATRIEPHFVDGRK-VFWKFKCFEGEDTLLLQDIKVQ 332
E +AH EM+EAK K I DA R EP +D V WK KCFE E LLQD+
Sbjct: 404 EAKEAHEEMMEAKGMKSKMTLICDARRTEPIMLDDNGFVLWKLKCFEEEQFFLLQDLGTF 463
Query: 331 EGDGTAATDERWFFYGPEKKNDIDKYISSRAK 236
+ ERW + PE+K +I+ R K
Sbjct: 464 D---DLCPHERWLAFKPEQKPEIENISLVRGK 492
>dbj|BAB10159.1| gb|AAF26952.1~gene_id:MBB18.24~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 544
Score = 50.4 bits (119), Expect = 1e-05
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = -2
Query: 514 LTTEVAQAHSEMLEAKEKIPKRK--ISDATRIEP-HFVDGRKVFWKFKCFEGEDTLLLQD 344
+ E + +SEM A + + K+ DA R P D +FW+ K + E +LLQD
Sbjct: 453 INAETQEVYSEMQNAIDMLSKKSQGSDDAVRTNPVELDDNGLIFWRLKSYNDEQNILLQD 512
Query: 343 IKVQEGDGTAATDERWFFYGPEKKNDIDKYIS 248
+ E+WF + E+K +I+KYIS
Sbjct: 513 LGSWN---EVCPHEKWFSFSSEQKPEIEKYIS 541
>ref|NP_198685.2| putative protein; protein id: At5g38690.1, supported by cDNA:
gi_20147345 [Arabidopsis thaliana]
gi|20147346|gb|AAM10386.1| AT5g38690/MBB18_24
[Arabidopsis thaliana] gi|23463059|gb|AAN33199.1|
At5g38690/MBB18_24 [Arabidopsis thaliana]
Length = 572
Score = 50.4 bits (119), Expect = 1e-05
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = -2
Query: 514 LTTEVAQAHSEMLEAKEKIPKRK--ISDATRIEP-HFVDGRKVFWKFKCFEGEDTLLLQD 344
+ E + +SEM A + + K+ DA R P D +FW+ K + E +LLQD
Sbjct: 466 INAETQEVYSEMQNAIDMLSKKSQGSDDAVRTNPVELDDNGLIFWRLKSYNDEQNILLQD 525
Query: 343 IKVQEGDGTAATDERWFFYGPEKKNDIDKYIS 248
+ E+WF + E+K +I+KYIS
Sbjct: 526 LGSWN---EVCPHEKWFSFSSEQKPEIEKYIS 554
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,399,618
Number of Sequences: 1393205
Number of extensions: 8141165
Number of successful extensions: 23325
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23303
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
