Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007149A_C01 KMC007149A_c01
(471 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_301866.1| hypothetical protein [Mycobacterium leprae] gi|... 34 0.88
gb|AAB08972.1| IgNARC [Ginglymostoma cirratum] 34 0.88
ref|NP_065432.2| NADH dehydrogenase subunit 6 [Schistosoma mekon... 33 2.0
gb|AAC64158.1| unknown [Salmonella typhimurium] 32 3.3
ref|NP_703568.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.3
>ref|NP_301866.1| hypothetical protein [Mycobacterium leprae] gi|25374800|pir||G87057
hypothetical protein [imported] - Mycobacterium leprae
gi|4539123|emb|CAB39567.1| hypothetical protein
MLCB458.02c [Mycobacterium leprae]
gi|13093154|emb|CAC31570.1| hypothetical protein
[Mycobacterium leprae]
Length = 127
Score = 33.9 bits (76), Expect = 0.88
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 312 LPSQASSFFLNFPFLGFCSSLNTTSQVVVGVNQESNPELTLPR 440
LP+ FF F G ++ +TT GV+ ES P+ T+PR
Sbjct: 76 LPANELEFFFVLTFTGSNTAKHTTGYWTAGVHHESRPDKTIPR 118
>gb|AAB08972.1| IgNARC [Ginglymostoma cirratum]
Length = 793
Score = 33.9 bits (76), Expect = 0.88
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = +1
Query: 283 EDLFPKPMCPFHPKHPHFFSIFPSWDSVH 369
E + KP P P+ PH FS+ PSW+ V+
Sbjct: 237 EAVVTKPSPPRQPQSPHVFSVVPSWEMVY 265
>ref|NP_065432.2| NADH dehydrogenase subunit 6 [Schistosoma mekongi]
gi|12248365|gb|AAG12189.2| NADH dehydrogenase subunit 6
[Schistosoma mekongi]
Length = 153
Score = 32.7 bits (73), Expect = 2.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 158 LRYDKLIMCLVFFFFFFCYFFSVFS 84
L + + LVFFFFFFC+FF +S
Sbjct: 81 LSFSYISFLLVFFFFFFCFFFLDYS 105
>gb|AAC64158.1| unknown [Salmonella typhimurium]
Length = 279
Score = 32.0 bits (71), Expect = 3.3
Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Frame = -3
Query: 415 DSWFTPTTTCEVVFRDEQNPKKGKLRKNEDA-WDGRGTLVLEISLQRD 275
DSW P +VV +D N KN + W G G+ LEI++Q D
Sbjct: 77 DSWSGPEPAPKVVLKDFDNTVSRSACKNLPSNWXGCGSFTLEITVQSD 124
>ref|NP_703568.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504710|emb|CAD51588.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 9341
Score = 32.0 bits (71), Expect = 3.3
Identities = 14/46 (30%), Positives = 29/46 (62%)
Frame = +1
Query: 1 ERKVFTSFLSSERILKTDTKWFFLK*ESEKTEKK*QKKKKKKTKHI 138
E ++F + + +E+ + K+F LK E+ KK Q++K+KK +++
Sbjct: 5280 ENELFDTIIDNEKSYRRRKKYFKLKQMEERKRKKEQERKRKKKENL 5325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,527,951
Number of Sequences: 1393205
Number of extensions: 9160059
Number of successful extensions: 39899
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 33186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37499
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
