Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007137A_C01 KMC007137A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566005.1| expressed protein; protein id: At2g44020.1, sup... 143 1e-42
gb|AAK55704.1|AF378901_1 AT4g02990/T4I9_13 [Arabidopsis thaliana... 100 1e-20
ref|NP_192208.1| hypothetical protein; protein id: At4g02990.1 [... 100 1e-20
pir||T01062 hypothetical protein YUP8H12R.46 - Arabidopsis thali... 67 1e-10
gb|AAM61550.1| unknown [Arabidopsis thaliana] 63 2e-09
>ref|NP_566005.1| expressed protein; protein id: At2g44020.1, supported by cDNA:
gi_14532591, supported by cDNA: gi_19310760 [Arabidopsis
thaliana] gi|7486477|pir||T00682 hypothetical protein
At2g44020 [imported] - Arabidopsis thaliana
gi|3212859|gb|AAC23410.1| expressed protein [Arabidopsis
thaliana] gi|14532592|gb|AAK64024.1| unknown protein
[Arabidopsis thaliana] gi|19310761|gb|AAL85111.1|
unknown protein [Arabidopsis thaliana]
Length = 507
Score = 143 bits (360), Expect(2) = 1e-42
Identities = 65/77 (84%), Positives = 74/77 (95%)
Frame = -3
Query: 495 RVELMKNSFYFFKTEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNC 316
RVELMKNS+YF+KTEMGRP+KELVE+PEYFTYSLESRIKPRYQ+L+SKGIR SLNW LNC
Sbjct: 391 RVELMKNSYYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQSKGIRSSLNWFLNC 450
Query: 315 SDQRFEERLQGNYIESE 265
SDQRFEERLQGN+I+ +
Sbjct: 451 SDQRFEERLQGNFIDPD 467
Score = 51.6 bits (122), Expect(2) = 1e-42
Identities = 25/35 (71%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
Frame = -1
Query: 245 FFMGGKLELPGNAILSDEEE-ESDDEMLYRRTVSL 144
F MGGKLE+PG I++DEEE ESDDE+LYRRT++L
Sbjct: 473 FDMGGKLEMPGGEIVTDEEEDESDDEVLYRRTLTL 507
>gb|AAK55704.1|AF378901_1 AT4g02990/T4I9_13 [Arabidopsis thaliana] gi|15450557|gb|AAK96456.1|
AT4g02990/T4I9_13 [Arabidopsis thaliana]
Length = 158
Score = 100 bits (248), Expect = 1e-20
Identities = 43/82 (52%), Positives = 66/82 (80%)
Frame = -3
Query: 504 VALRVELMKNSFYFFKTEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWM 325
+AL + +MK SF +F+ EM RP+++LV+FP +FTY LES +KPR++++ KGI+CSL WM
Sbjct: 40 LALNLGIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLAWM 99
Query: 324 LNCSDQRFEERLQGNYIESEKV 259
LNCSD++FE+R+ + I+ E+V
Sbjct: 100 LNCSDEKFEQRMSYDTIDIEEV 121
>ref|NP_192208.1| hypothetical protein; protein id: At4g02990.1 [Arabidopsis
thaliana] gi|7487645|pir||T01394 hypothetical protein
T4I9.13 - Arabidopsis thaliana gi|3924606|gb|AAC79107.1|
hypothetical protein [Arabidopsis thaliana]
gi|7269784|emb|CAB77784.1| hypothetical protein
[Arabidopsis thaliana]
Length = 541
Score = 100 bits (248), Expect = 1e-20
Identities = 43/82 (52%), Positives = 66/82 (80%)
Frame = -3
Query: 504 VALRVELMKNSFYFFKTEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWM 325
+AL + +MK SF +F+ EM RP+++LV+FP +FTY LES +KPR++++ KGI+CSL WM
Sbjct: 423 LALNLGIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLAWM 482
Query: 324 LNCSDQRFEERLQGNYIESEKV 259
LNCSD++FE+R+ + I+ E+V
Sbjct: 483 LNCSDEKFEQRMSYDTIDIEEV 504
>pir||T01062 hypothetical protein YUP8H12R.46 - Arabidopsis thaliana
gi|3152591|gb|AAC17072.1| Similar to hypothetical
protein gb|Z97336 from A. thaliana. This gene is
probably cut off. [Arabidopsis thaliana]
Length = 600
Score = 67.0 bits (162), Expect = 1e-10
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = -3
Query: 489 ELMKNSFYFFKTEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSD 310
++++ F F M +PV+E++E+P YF+YSLE RIKPR++ LK + I C+L ML +D
Sbjct: 521 KVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVLKGRNIECTLQEMLGKND 580
Query: 309 QRF 301
+ F
Sbjct: 581 EEF 583
>gb|AAM61550.1| unknown [Arabidopsis thaliana]
Length = 320
Score = 62.8 bits (151), Expect = 2e-09
Identities = 27/63 (42%), Positives = 45/63 (70%)
Frame = -3
Query: 465 FFKTEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQ 286
+ EMGR V+E++EFP+YF++SLE+RIKPR++ +KG+R L ML ++ F + L+
Sbjct: 255 YLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGFRDTLE 314
Query: 285 GNY 277
++
Sbjct: 315 VHF 317
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,426,767
Number of Sequences: 1393205
Number of extensions: 8361292
Number of successful extensions: 22297
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 21077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22219
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
